Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3398g00003 ATGGAGAAAGAATTGATCCGATTATATGAAGCAGTGAAGAAGGCGGCCGATGCGGCCACGACCTCAACCGCCGGCGAGGTCGAAGAAAATCGATGCCTTGATGCGTTCAAGCTCCTCAAGAAGTTTCCCGTCAATTATCAAATTTTGGCATCGACACAGGTGGGAAAACATCTAAGAGTTCTTACAAAGCATCCCAAAAAGAAGATCCGGGCTTTCGCTATGGACTTGTTAGATATATGGAAAGCTAAAATCATGAAGGAAATCAGCAAAAGCAAGGAGGAAAAAGTTTATCAGAAGGTTTCAGAGGCTGAGAAAACTAAATGGAATAGGACCTCAAGTTCCCAAAACGGAAAGACTAAGGCTGACGTGGACGTTGCCAAGGCTGAGAAAAATGATAGGAATATTGAGACATCAACCTCCGAAAATGTAAAGGAAAAAGATTGCAATGTAGTTACAGGAGAGAAAACTGTTTCTGTTGCAAACATGGCCAAGGATGAGAAGAAGCAAGTTTCTGGAATACTAAATGAGGCACCCTCAAGCCTTGTTGCTACTTCAAAGCAGGAAACTATGATTAAAACTAACGATGAAAGGCGAGACAAAATAAGGGAAATTCTTCATGAGGCATTCTCTAGAGTTTCAGGGGAGGCTGATGAATCAATCAAGGATCAAGTTAAAACTTGTGACCCTGTTAGAGTTTCTGTTGCAGTGGAGTCTGTGCTATTTCAGAACTGGGGCCATTTTAATGGGGCTCAGAAGATCAAGTACAGGTCTTTGATGTTTAACCTGAAGGATCCGAAGAACCCAGATTTCCGAAGAAGAGTTCTGCTCGGAGAATACTCGCCGGAGCAGCTCGTGGAGATGAAAACAGCAGAAATGGCAAGTGACACGAGGAAGAAGGAGAACGAGACGATCAAAAGGAAAGCTTTGTTTGAGTGTGAGCGTGAACAGAAACCAAAAGCCACAACTGATCAGTTCAAGTGTGGGAAATGTGGAAAGAGAGAGAGCATCTTTCACCAGATGCAGACTCGGAGTGCTGATGAACCTATGACCACATATGTTACCTGCGTTTCATGCAATCACCATTGGAAGTTCTGTTAG 1098 0.4335 MEKELIRLYEAVKKAADAATTSTAGEVEENRCLDAFKLLKKFPVNYQILASTQVGKHLRVLTKHPKKKIRAFAMDLLDIWKAKIMKEISKSKEEKVYQKVSEAEKTKWNRTSSSQNGKTKADVDVAKAEKNDRNIETSTSENVKEKDCNVVTGEKTVSVANMAKDEKKQVSGILNEAPSSLVATSKQETMIKTNDERRDKIREILHEAFSRVSGEADESIKDQVKTCDPVRVSVAVESVLFQNWGHFNGAQKIKYRSLMFNLKDPKNPDFRRRVLLGEYSPEQLVEMKTAEMASDTRKKENETIKRKALFECEREQKPKATTDQFKCGKCGKRESIFHQMQTRSADEPMTTYVTCVSCNHHWKFC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3398g00003 365 Pfam TFIIS helical bundle-like domain 37 83 IPR017923 -
Pral3398g00003 365 SMART TFS2_5 8 86 IPR003617 GO:0005634
Pral3398g00003 365 PIRSF TFIIS 1 365 IPR035100 -
Pral3398g00003 365 Pfam Transcription factor S-II (TFIIS), central domain 193 311 IPR003618 GO:0006351
Pral3398g00003 365 Pfam Transcription factor S-II (TFIIS) 325 363 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral3398g00003 365 Gene3D - 294 365 - -
Pral3398g00003 365 NCBIfam transcription elongation factor S-II 23 365 IPR006289 GO:0003676|GO:0005634|GO:0006368
Pral3398g00003 365 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 3 93 IPR035441 -
Pral3398g00003 365 ProSiteProfiles TFIIS N-terminal domain profile. 10 87 IPR017923 -
Pral3398g00003 365 SUPERFAMILY Elongation factor TFIIS domain 2 189 295 IPR036575 GO:0006351
Pral3398g00003 365 CDD Zn-ribbon_TFIIS 318 364 - -
Pral3398g00003 365 ProSitePatterns Zinc finger TFIIS-type signature. 327 362 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral3398g00003 365 Gene3D - 179 293 IPR036575 GO:0006351
Pral3398g00003 365 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 21 365 - -
Pral3398g00003 365 CDD TFIIS_I 28 82 - -
Pral3398g00003 365 ProSiteProfiles Zinc finger TFIIS-type profile. 323 363 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral3398g00003 365 ProSiteProfiles TFIIS central domain profile. 197 320 IPR003618 GO:0006351
Pral3398g00003 365 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 100 IPR035441 -
Pral3398g00003 365 SMART Cys4_2 325 364 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral3398g00003 365 SUPERFAMILY Zinc beta-ribbon 304 363 - -
Pral3398g00003 365 SMART mid_6 199 303 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3398g00003 Pral-Chr3398 30208 31398 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pral3398g00003 TFIIS_M 9.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3398g00003 K03145 - qsa:O6P43_014856 401.364