Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3395g00026 ATGGAGAGGAAAAAGAACAGCAATAATGGAAGCAAGATTTGTATAATCTGCAAAAAGTGCTTCGCCAGCGGAAAAGCCATGGGAGGGCATATGAGGTCCCACTTTGTGAAATTGCCCGTCGTTCCCAAGCCTGCTCCAATAACCCCAATTGCAGATCATATCCCTTTAGAAATATCCGAAGTCTGTGTTGATGGGGGTTCATCCTTATCCCATCAGCGTTCGATCTCCTTCTCTTCACCAGAAAGTCATATGATGATGAAATCACATACTGAACATAACTTTCACTCCATGAATCAAGACTTCGCAACAAGACTATCGAATCCCAGTGATGACCAAGGAAGTGAAGCAGATCAATCTTACATGACCGGAAAGAGATCTAAGCGCAGCCGTAAAATTGATGATGCAACAAGAGCATTAATGTCACCGCCTAAGACCAAGGTTGATGAAGCCGGTCCAAACCATGCAGGTTCGATCTTTGATTCATACTTTTTAACTATAAATGCTGCTTTGACTCTCATGTTACTTTCCAAGGAGAAATGGCCTGAAGGCAAAGAATTGATCAAGAAGAAACAAAAATTGAAGGATGAGAATGAACAAGAAGACTCATATGCGGAGGTTTACTCTCAGGGGGAAAGGTTTGAATGCAAGATGTGCAGGAAAATTTTTGGATCTTACCAAGCACTTGGTGGGCACAAAGCAAGCCATAAAAGGTTTATCAAGCATGATCAATTGGAGGTAGATGGTGAATTTGATGAAGAAAATGAGTATGATGGTAACATAGGGAATCATACTGATGTTCTTGAAGATCCAGCAGTGTTGAAGTGCCCCCACTGCTCTAAAGTGTTTGGGTCTAGCCAAGGACTTGGAAGGCACAAGAAGGTACATTTTCCCAATGCCACGAATTTTGGGGCTAGATACATAGATCTTAACTCACCTGCTCATATGGAAGATACTGAAGAATAG 963 0.4195 MERKKNSNNGSKICIICKKCFASGKAMGGHMRSHFVKLPVVPKPAPITPIADHIPLEISEVCVDGGSSLSHQRSISFSSPESHMMMKSHTEHNFHSMNQDFATRLSNPSDDQGSEADQSYMTGKRSKRSRKIDDATRALMSPPKTKVDEAGPNHAGSIFDSYFLTINAALTLMLLSKEKWPEGKELIKKKQKLKDENEQEDSYAEVYSQGERFECKMCRKIFGSYQALGGHKASHKRFIKHDQLEVDGEFDEENEYDGNIGNHTDVLEDPAVLKCPHCSKVFGSSQGLGRHKKVHFPNATNFGARYIDLNSPAHMEDTEE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3395g00026 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 300 IPR013087 -
Pral3395g00026 320 MobiDBLite consensus disorder prediction 101 120 - -
Pral3395g00026 320 MobiDBLite consensus disorder prediction 101 152 - -
Pral3395g00026 320 SUPERFAMILY beta-beta-alpha zinc fingers 212 295 IPR036236 -
Pral3395g00026 320 ProSitePatterns Zinc finger C2H2 type domain signature. 275 295 IPR013087 -
Pral3395g00026 320 MobiDBLite consensus disorder prediction 121 137 - -
Pral3395g00026 320 Pfam C2H2-type zinc finger 274 295 - -
Pral3395g00026 320 Pfam C2H2-type zinc finger 212 236 - -
Pral3395g00026 320 Pfam C2H2-type zinc finger 13 34 - -
Pral3395g00026 320 Gene3D Classic Zinc Finger 186 297 - -
Pral3395g00026 320 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Pral3395g00026 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Pral3395g00026 320 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 12 318 IPR044303 GO:0006355
Pral3395g00026 320 SMART c2h2final6 213 235 IPR013087 -
Pral3395g00026 320 SMART c2h2final6 273 295 IPR013087 -
Pral3395g00026 320 SMART c2h2final6 12 34 IPR013087 -
Pral3395g00026 320 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Pral3395g00026 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 235 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3395g00026 Pral-Chr3395 382192 383154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3395g00026 14 319 C2H2 Transcription Factor Family AT3G60580 28.659 5.41e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3395g00026 zf-C2H2_6 1.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3395g00026 - - pcin:129316597 357.836