Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3390g00012 ATGGGATTCAGAATCAGAAGTCTCAACTTGATAAATCTTTTGCTGATACTTTCCATCTTCCACTGGAGTTTGAGTTCTACAGCGGACACCATCACCCCAGGTCAACTCATCAGAGATCATGAAACAATAAGTTCAGATAACAGTGACTTCAAGCTTGGATTCTTCAGCCCTCAAAATTCCACAATCCGCTATGTGGGAATCTGGTATCTTTCTGAATCTAACATCATCTGGGTGGCTAATAGAAATCAGCTACTGGTTGATGCTTCTGGGACTGTCACAATTTCCAACAATGGCAATCTCGTGATATTGGACAAGCAAAACATGAGTGTTTGGTCTTCGAATATCTCAAAGATTGTAACCAATTCAACTGTTAAGCTTCTAAACACCGGGAACCTGGTCCTCTTTGATGGCAACACGGGAGAAGCTATATGGCAAAGTTTTCAAGATCCTTCTGATATCATGGTGCCAAAAATGAAACTCAGCATCAACAAAAGAACAGGAGAGAAGGTGAAACTTACATCATGGAAAAGCTCTTCTGACCCATCTATTGGATACTATACTGCTTCTCTTGAACGCCCAAATGCTCCTGATGTTTTTCTGTGGTTTAATGGAACTCGCCCATATGCTCGAACTGGTCCATGGAATGGTAGGATTTTTCTAGGATCACCAATGATGTCAAGTGGATGGAGTGGAGGAAATGAAGATGATGGAACTGTTTATGTGACTTACAATTTGGAAAATAATGCTGACTTTGCAGTTATGGGTTTGAATCCACAAGGCCAACTTTGGATAGCAGGGTGGAATAACAAAAGGGAAGGTTCGAGACATGTGTTGAATGGGACTTATTGTGATATCTATGGCATATGTGGGGCATTTGGAATCTGTAGTTCACAAAGTTCACCAATTTGTGGCTGTTTGAGTGGGTATGAACCACATAATTTAGAGGAATGGAATAGGCAAAATTGGACTAGCGGATGTGTGAGGAAGAAGCCACTACAATGTGAGGGTTTTGCAAATAAAAGTGAAGTACATAAACAATATGAGTTTGTGAAACTTGACAATACGAAAGTGCCAGACTTTTTGGAGAGGCTGACTGCTACAGAAGATAGATGTAGAACACAGTGTTTGCATAATTGCTCTTGTGTGGCATATGCATATGATTCAAATGGCATTGGGTGCATGCATTGGAGTGGAGATTTGATTGACATACAAAGATTCTCAAGAGGAGGGGTTGATCTTTACATTCGTGTGTCTTTGTCCAAACTTGAAAAAGATTCACCAAGCAGAACAATCATCATTGCAGTTACAGTGCCAATAGGAATTATTACATTTACAACATGTGCATACTTCTTATGGAAATTGACTGCTAAATATGCAGGTGAGACAGATTCACACGGTCAATCTCAAAGAATGATTAATCAAGATGAAGAAGTCAAGATGAATGAACTTCCACTTTTTGATTTTGAAGATCTTGTAACTGCTACAAACAACTTCCATTCAGCAAACAAACTTGGACGCGGCGGTTTCGGTTCAGTATACAAGGGGCAATTGAAAGATGGACAACATATTGCAATCAAAAGACTTTCAAAAGCATCAAGACAAGGGCAAGAAGAGTTCATGAATGAGGTTGTTGTTATTTCAAAGCTTCAACATCGCAATCTAGTAAGACTTTTAGGCTGTTGCATTCAGCAAGCTGAAAGGATATTAATCTATGAGTACATGCATAACAAGAGTTTGGATGCAATTCTATTTGATTCAATCAAAAAGAAAGAATTAGATTGGGAAAAACGTTTCAAAATTATTGAAGGAATCTCTAGAGGTTTGCTTTATCTTCATCGAGATTCTAGAATAAAAATCATTCATAGAGATTTAAAGGTTAGTAATGTCTTGTTGGATGAAGAGCTAAATCCAAAAATATCAGACTTTGGTATGGCTAGAATATTTAGAAGCAATCAAGATCAAGCTAATACTAGAAGAGTGGCTGGGACATAG 1992 0.3845 MGFRIRSLNLINLLLILSIFHWSLSSTADTITPGQLIRDHETISSDNSDFKLGFFSPQNSTIRYVGIWYLSESNIIWVANRNQLLVDASGTVTISNNGNLVILDKQNMSVWSSNISKIVTNSTVKLLNTGNLVLFDGNTGEAIWQSFQDPSDIMVPKMKLSINKRTGEKVKLTSWKSSSDPSIGYYTASLERPNAPDVFLWFNGTRPYARTGPWNGRIFLGSPMMSSGWSGGNEDDGTVYVTYNLENNADFAVMGLNPQGQLWIAGWNNKREGSRHVLNGTYCDIYGICGAFGICSSQSSPICGCLSGYEPHNLEEWNRQNWTSGCVRKKPLQCEGFANKSEVHKQYEFVKLDNTKVPDFLERLTATEDRCRTQCLHNCSCVAYAYDSNGIGCMHWSGDLIDIQRFSRGGVDLYIRVSLSKLEKDSPSRTIIIAVTVPIGIITFTTCAYFLWKLTAKYAGETDSHGQSQRMINQDEEVKMNELPLFDFEDLVTATNNFHSANKLGRGGFGSVYKGQLKDGQHIAIKRLSKASRQGQEEFMNEVVVISKLQHRNLVRLLGCCIQQAERILIYEYMHNKSLDAILFDSIKKKELDWEKRFKIIEGISRGLLYLHRDSRIKIIHRDLKVSNVLLDEELNPKISDFGMARIFRSNQDQANTRRVAGT 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3390g00012 663 Pfam PAN-like domain 347 403 IPR003609 -
Pral3390g00012 663 Pfam S-locus glycoprotein domain 210 312 IPR000858 GO:0048544
Pral3390g00012 663 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 181 IPR036426 -
Pral3390g00012 663 Pfam Protein kinase domain 498 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3390g00012 663 SMART blect_4 34 150 IPR001480 -
Pral3390g00012 663 Gene3D - 23 147 IPR036426 -
Pral3390g00012 663 SUPERFAMILY Hairpin loop containing domain-like 348 414 - -
Pral3390g00012 663 SMART serkin_6 498 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3390g00012 663 CDD B_lectin 35 150 IPR001480 -
Pral3390g00012 663 Pfam D-mannose binding lectin 75 176 IPR001480 -
Pral3390g00012 663 Gene3D Transferase(Phosphotransferase) domain 1 574 663 - -
Pral3390g00012 663 CDD PAN_AP_plant 331 418 - -
Pral3390g00012 663 ProSiteProfiles Protein kinase domain profile. 498 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3390g00012 663 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 657 - -
Pral3390g00012 663 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 462 573 - -
Pral3390g00012 663 ProSiteProfiles PAN/Apple domain profile. 334 418 IPR003609 -
Pral3390g00012 663 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Pral3390g00012 663 SUPERFAMILY Protein kinase-like (PK-like) 481 662 IPR011009 -
Pral3390g00012 663 Gene3D Phosphorylase Kinase; domain 1 458 573 - -
Pral3390g00012 663 ProSitePatterns Protein kinases ATP-binding region signature. 504 526 IPR017441 GO:0005524
Pral3390g00012 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Pral3390g00012 663 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 147 - -
Pral3390g00012 663 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 574 663 - -
Pral3390g00012 663 SMART ntp_6 344 417 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3390g00012 Pral-Chr3390 364042 366685 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3390g00012 428 663 Receptor kinase-like Gene Family AT4G23190 51.883 4.44e-78 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral3390g00012 Pkinase 8.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3390g00012 - - pcin:129286414 1009.98