Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3387g00014 ATGTCATTCCGGAGTATAGTTCGTGATGTGAGAGATAGCTTAGGGAGCTTATCTAGACGGAGTTTTGATGTGCGGCTGACTGGCCATCACAGAGGAAAATCTCATGGTGCCATACATGATCAGCCAGAAGTAATTGAAAATAGTTGCTGGGCTAGCTTGCCCCCAGAATTGTTGTATGATATCATTAGAAGGCTAGTAGAGAGTGAAAGTACATGGCCTGCACGAAAGCATGTTGTTGCATGTGCTGCAGTATGCCAGTCTTGGAGGACTATGTGCAAAGAAATTGTTGAGAGTCCAGAGTTTAGTGGCCAGCTTACATTCCCTGTGTCCTTGAAGCAGCCAGGATCACGAGATGGAACCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTATCATATCGCCTTTTCCTTTGTCTCAGCTCTGCTTTGTTAGTTGAAAATGGGTTTCAATTTGCTAAGAGGACGAGAAGAACAACTTACACAGAGTATATTATTTCCATGGATGCCGGCAATATCTCTAGATCCAGTAGCTCTTACATTGGAAAGCTGAGATCAAACTTGCTGGGAACCAAATTTATAATATACGATACACAGCCTCCCTACAATTCTGCCCATATACCACCTCCAGGGAGGACAAGCCGAAGGTTTTATTCAAAAAAGGTTTCACCAAGGGTCCCTTCCGGGAGTTTCAACGTAGCTCAAGTAAAATATGAATTAAATGTGCTTGGGACACGAGGCCCAAGAAAGATGCAGTGCATCATGCATTCAATACCAGCATCAGCACTTGACGATGGTGGCACAGTCCCTGGCCAACCCGAGCTACTTCCTCACGCCTTGGAGGACTCGTTCCGGAGCATCTCCTTTTCAAAATCCTTAGACCGCTCTATTGAGTTCAGCAGCTCAAGGTTTTCTGTGATTGGCGAAGGCTGCAACAACGATGAGGGCGGCAAGGCAAGGCCCTTGGTTCTAAAGAACAAACCTCCAAGATGGCATGAACAATTGCAATGTTGGTGCCTTAACTTCCGTGGCCGGGTAACAGTTGCATCAGTTAAAAACTTTCAGTTGATTGCTGCTGCCCAGCCAGCAGCCAGTGCTTCCACACCATCTCAGCCGGCACCGTCGGAGCAAGATAAGATAATCCTGCAGTTCGGTAAAGTTGGGAAAGATCTGTTCACCATGGATTATCGTTATCCTCTATCGGCCTTCCAGGCTTTTGCTATATGCCTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 1263 0.4545 MSFRSIVRDVRDSLGSLSRRSFDVRLTGHHRGKSHGAIHDQPEVIENSCWASLPPELLYDIIRRLVESESTWPARKHVVACAAVCQSWRTMCKEIVESPEFSGQLTFPVSLKQPGSRDGTIQCFIKRDKSNLSYRLFLCLSSALLVENGFQFAKRTRRTTYTEYIISMDAGNISRSSSSYIGKLRSNLLGTKFIIYDTQPPYNSAHIPPPGRTSRRFYSKKVSPRVPSGSFNVAQVKYELNVLGTRGPRKMQCIMHSIPASALDDGGTVPGQPELLPHALEDSFRSISFSKSLDRSIEFSSSRFSVIGEGCNNDEGGKARPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAASASTPSQPAPSEQDKIILQFGKVGKDLFTMDYRYPLSAFQAFAICLSSFDTKLACE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3387g00014 420 CDD F-box_AtTLP-like 50 94 - -
Pral3387g00014 420 Gene3D - 43 97 - -
Pral3387g00014 420 ProSitePatterns Tub family signature 2. 405 420 IPR018066 -
Pral3387g00014 420 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Pral3387g00014 420 SUPERFAMILY F-box domain 44 93 IPR036047 GO:0005515
Pral3387g00014 420 SUPERFAMILY Tubby C-terminal domain-like 99 420 IPR025659 -
Pral3387g00014 420 Gene3D Tubby Protein; Chain A 107 420 IPR025659 -
Pral3387g00014 420 Pfam F-box domain 50 96 IPR001810 GO:0005515
Pral3387g00014 420 Pfam Tub family 111 415 IPR000007 -
Pral3387g00014 420 PRINTS Tubby superfamily signature 377 396 IPR000007 -
Pral3387g00014 420 PRINTS Tubby superfamily signature 398 420 IPR000007 -
Pral3387g00014 420 PRINTS Tubby superfamily signature 230 257 IPR000007 -
Pral3387g00014 420 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Pral3387g00014 420 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Pral3387g00014 420 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Pral3387g00014 420 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Pral3387g00014 420 PANTHER TUBBY-RELATED 41 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3387g00014 Pral-Chr3387 282449 285937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3387g00014 1 420 TUB Transcription Factor Family AT1G76900 66.231 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral3387g00014 Tub 3.5e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3387g00014 K19600 - gmx:100814578 711.835