Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3387g00001 ATGGGTGTGATGAGAGCGGTATTTTTATTATGCTTTGTTGTAATAACTTGCTTCCACATTAATGGTGTAGCATCAGTTGCCATGATAAAAGAGGAGAAACATGCTTTGCTTCAGACTAAATGTTGGAATTTTAGCAACAGAGCCCACAACTTGTCAGACCCTTGTCACTGGGAAGGCATATCTTGCAATGATTTTGGAAGCCTTGTTGAGATGAATTATCAACAGATGACTACACAATGCTACTGTCTAGCAGATTTCAATTTCACTGCATTTCCCAATCTAGAATGTCTCACACTTTCTAAAACGGGTTTGATAGATACCATTCCAAGTCAGATAGGATCTCTTCATAAACTTATCCATCTAAACTTATCTTTTAACAATCTTACTGGGATTATTCCATCCCAAATAGGAGCTCTTCAAAAGCTCACTTATTTGGATTTGTTTGACAATAGTCTTACTAGGATCATTCCATCACAGATAGGATATCTTCAAAATCTCACTTATCTGGGCTTGTCTTATAACAGTCTTACTGGGATTATTCCATCCCAAATAGCAGCTCTTCAAAATCTCACTTATCTGGACATATCTTCCAATAGTCTCACTGGGAGCATTCCATCACAGATAGGATCTCTACATAATCTGATTGAACTACGCTTGTATTCCAACAGTCTTACCGGGACCATTCCATCACAGATAGGATCTCTTCATAATCTGATTGAGCTAGACTTGTCTTATAATTGTCTTACTGATCCCATTCCAACTCAAATAGAAGATCTTCCACAACTCACATATCTAAACTTGTCTTACAACAATATTGTTTCAAGGAATGAGCATGCAGTGCTTCAAAGCAAATGGTGGAACTTAAGCAATGGTGGCTCCCACTACTATTGTGACTGGGATGGCATATCATGCGATGGCTTAGGAAGAGTTATCTTAATTAACCAACCAAGAATCTATTCACAGCATCCTCAACTAGCAGATCTCAACTTCACTGAATTAGAAAGACTAAAATACTTAAATCTTTCTAGAATGGGGATAACAGGTACCATTCCAACTCACATAGGAGGTCTTCAAAATCTCAATTATTTGGACTTGTCTTGCAACAACCTTACAGGTATCATTCCAACTCATATAGGAGGCCTTCAAAATCTCAATTATTTGGACTTGTCTTGCAACAACCTTTCAGGTGGCATCCCTTCTTCAATTTTCGATTTGAGATATTTACAAGATTTTGATGCTTCTCAAAATCAATTAAGTGGTGGCATTCCAGAAAAATTAGGAAATTTCAATATTGGCTTTCACATAAATGTCTCCCAAAATAATCTGAGTGGAAACATACCGGACATTTTGAACTACTTAGATGTTGATGTTAACTTTACTCACAACAAATTCAATGGAATATTACCATCTAATATATGCAGTGAGCCACCATCATGTAGCATTGACTTAAGCTACAACAGTATCTCTGGTAGCATACCTGGAGAATTTGGTAGGCTACAATACATCAACTTGTCATACAATCTTCTTAGCGGCTATGTTCCAAGTGAAGTTTATAGCTCTTTTCCTCATGACATTTTAAATGGTAATAGAGAATTACTTACGCCAGAGAAGATACATAAAGGCTCAAAGTCTTGGCTGAAAATCATTATTCCTTTGACAATTTTTCTTGTCATCACATTTGTTGTGGGTTTTATCTTATTTGAATCATTCAAAAAGCACAAGAAATCCATAAGTAAGGCAAGAGAAGCAAAAAATGGGGATTTGTTTTCCATATGGAATTATGATGGAAAAATTGCATATGAAGATATCATTGAAGCAACAGAGGACTTTGACATCAAATATTGTATCGGAACCGGTGCTTATGGAAGTGTTTATAGGGCACAACTTCCAAGTGGCAAAATCATAGCATTGAAAAAACTCCATAGAAGAGAATATGGAGACACATTTTTGGCCAAGAGTTTTCACAATGAAGTGAAGATGTTGAGTGAAATTCGACATCGCAATATTGTAAAGCTTCATGGTTTTTGTTTGCATAATCAATGCATGTTTCTCATATATGAATACATGGAAAGAGGAAGCCTTTTTTATGTGTTGAATTATGATGATAAAGCTAAAGAGTTGAATTGGAGTAAGAGAGTGAATGCCATTAAAGAAATAACAAATGCTTTGTTGTATATACATCATCATTGTGCTCCTTCAATTATCCACTGA 2211 0.3591 MGVMRAVFLLCFVVITCFHINGVASVAMIKEEKHALLQTKCWNFSNRAHNLSDPCHWEGISCNDFGSLVEMNYQQMTTQCYCLADFNFTAFPNLECLTLSKTGLIDTIPSQIGSLHKLIHLNLSFNNLTGIIPSQIGALQKLTYLDLFDNSLTRIIPSQIGYLQNLTYLGLSYNSLTGIIPSQIAALQNLTYLDISSNSLTGSIPSQIGSLHNLIELRLYSNSLTGTIPSQIGSLHNLIELDLSYNCLTDPIPTQIEDLPQLTYLNLSYNNIVSRNEHAVLQSKWWNLSNGGSHYYCDWDGISCDGLGRVILINQPRIYSQHPQLADLNFTELERLKYLNLSRMGITGTIPTHIGGLQNLNYLDLSCNNLTGIIPTHIGGLQNLNYLDLSCNNLSGGIPSSIFDLRYLQDFDASQNQLSGGIPEKLGNFNIGFHINVSQNNLSGNIPDILNYLDVDVNFTHNKFNGILPSNICSEPPSCSIDLSYNSISGSIPGEFGRLQYINLSYNLLSGYVPSEVYSSFPHDILNGNRELLTPEKIHKGSKSWLKIIIPLTIFLVITFVVGFILFESFKKHKKSISKAREAKNGDLFSIWNYDGKIAYEDIIEATEDFDIKYCIGTGAYGSVYRAQLPSGKIIALKKLHRREYGDTFLAKSFHNEVKMLSEIRHRNIVKLHGFCLHNQCMFLIYEYMERGSLFYVLNYDDKAKELNWSKRVNAIKEITNALLYIHHHCAPSIIH 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3387g00001 736 SUPERFAMILY Protein kinase-like (PK-like) 594 736 IPR011009 -
Pral3387g00001 736 SMART LRR_typ_2 496 520 IPR003591 -
Pral3387g00001 736 SMART LRR_typ_2 259 282 IPR003591 -
Pral3387g00001 736 SMART LRR_typ_2 163 186 IPR003591 -
Pral3387g00001 736 SMART LRR_typ_2 187 211 IPR003591 -
Pral3387g00001 736 SMART LRR_typ_2 235 258 IPR003591 -
Pral3387g00001 736 SMART LRR_typ_2 381 405 IPR003591 -
Pral3387g00001 736 SMART LRR_typ_2 115 139 IPR003591 -
Pral3387g00001 736 SMART LRR_typ_2 357 380 IPR003591 -
Pral3387g00001 736 SMART LRR_sd22_2 357 383 - -
Pral3387g00001 736 SMART LRR_sd22_2 187 213 - -
Pral3387g00001 736 SMART LRR_sd22_2 235 261 - -
Pral3387g00001 736 SMART LRR_sd22_2 139 165 - -
Pral3387g00001 736 ProSitePatterns Protein kinases ATP-binding region signature. 616 638 IPR017441 GO:0005524
Pral3387g00001 736 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 325 543 - -
Pral3387g00001 736 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 333 736 - -
Pral3387g00001 736 ProSiteProfiles Leucine-rich repeat profile. 261 282 IPR001611 GO:0005515
Pral3387g00001 736 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Pral3387g00001 736 Pfam Leucine rich repeat 213 272 IPR001611 GO:0005515
Pral3387g00001 736 Pfam Leucine rich repeat 359 418 IPR001611 GO:0005515
Pral3387g00001 736 SUPERFAMILY L domain-like 41 275 - -
Pral3387g00001 736 SUPERFAMILY L domain-like 292 515 - -
Pral3387g00001 736 Gene3D Ribonuclease Inhibitor 28 179 IPR032675 -
Pral3387g00001 736 Gene3D Phosphorylase Kinase; domain 1 570 688 - -
Pral3387g00001 736 PRINTS Leucine-rich repeat signature 190 203 - -
Pral3387g00001 736 PRINTS Leucine-rich repeat signature 357 370 - -
Pral3387g00001 736 Gene3D Ribonuclease Inhibitor 279 426 IPR032675 -
Pral3387g00001 736 Gene3D Ribonuclease Inhibitor 180 278 IPR032675 -
Pral3387g00001 736 Gene3D Ribonuclease Inhibitor 427 540 IPR032675 -
Pral3387g00001 736 Gene3D Transferase(Phosphotransferase) domain 1 689 736 - -
Pral3387g00001 736 FunFam Leucine-rich repeat receptor protein kinase MSP1 572 688 - -
Pral3387g00001 736 FunFam Leucine-rich receptor-like protein kinase family protein 182 275 - -
Pral3387g00001 736 FunFam Nuclear pore complex protein NUP107 27 181 - -
Pral3387g00001 736 SMART serkin_6 610 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3387g00001 736 Pfam Leucine Rich Repeat 117 137 IPR001611 GO:0005515
Pral3387g00001 736 Pfam Protein kinase domain 614 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3387g00001 736 ProSiteProfiles Protein kinase domain profile. 610 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3387g00001 Pral-Chr3387 38594 52317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3387g00001 7 736 Receptor kinase-like Gene Family AT4G08850 30.702 1.22e-108 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral3387g00001 Pkinase 3.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3387g00001 - - pcin:129297054 712.99