Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3383g00011 ATGTCGGAAGCGGATGAGTACCGCTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGGAAGCTGAAGGATACATTTGAAAAGTTTGGCAAACTTCTTGAGGCAAAGGTGGTTGTGGACAAATTCTCTGGGCGCTCTCGTGGCTTTGGATTTGTTACGTTTGATGAGAGGAAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGCATGGATTTAGATGGTCGAACTATCACTGTTGATAAAGCTCAGCCTCAACAAGGATCTGCTAGAGATGATGGTGATCGTTACCGTGAAAGGGGTCGTGATCGGGATCGTGATCGTAACCGAGATTATGGAGGTGGTCGAAGCTCTAATGGTGGTGAATGTTTTAAATGTGGTAAACCTGGTCATTTTGCCAGGGAGTGCCCTAGTGAAGGAGCAGGAGGGGGCAAGTATGGTGGCAGGGAAGGTAGGTATGGTGGCAGGAGTAGTGGTGGTGGTCACTATGGTCCTGATAGGAATGCAGATCGTTATTCTGGTGGGCGCAACAGGGACTCAGGTAGTCACGGAGATTCTGGAAGTGATCGTCGTGATCGTGCTGGACCTTATGAACGTCGAGGATCAGGAGGCTTCCGTTCTGGATAG 627 0.4896 MSEADEYRCFIGGLAWSTSDRKLKDTFEKFGKLLEAKVVVDKFSGRSRGFGFVTFDERKAMEEAIEAMNGMDLDGRTITVDKAQPQQGSARDDGDRYRERGRDRDRDRNRDYGGGRSSNGGECFKCGKPGHFARECPSEGAGGGKYGGREGRYGGRSSGGGHYGPDRNADRYSGGRNRDSGSHGDSGSDRRDRAGPYERRGSGGFRSG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3383g00011 208 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Pral3383g00011 208 SUPERFAMILY Retrovirus zinc finger-like domains 105 141 IPR036875 GO:0003676|GO:0008270
Pral3383g00011 208 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 204 - -
Pral3383g00011 208 CDD RRM2_NsCP33_like 8 83 - -
Pral3383g00011 208 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
Pral3383g00011 208 ProSiteProfiles Zinc finger CCHC-type profile. 123 138 IPR001878 GO:0003676|GO:0008270
Pral3383g00011 208 FunFam Glycine-rich RNA-binding protein RZ1A 1 118 - -
Pral3383g00011 208 Gene3D - 119 184 - -
Pral3383g00011 208 SMART rrm1_1 8 81 IPR000504 GO:0003723
Pral3383g00011 208 MobiDBLite consensus disorder prediction 88 113 - -
Pral3383g00011 208 SUPERFAMILY RNA-binding domain, RBD 4 115 IPR035979 GO:0003676
Pral3383g00011 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Pral3383g00011 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Pral3383g00011 208 MobiDBLite consensus disorder prediction 169 199 - -
Pral3383g00011 208 MobiDBLite consensus disorder prediction 76 208 - -
Pral3383g00011 208 Gene3D - 1 118 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3383g00011 Pral-Chr3383 247435 251157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3383g00011 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 38.158 5.98e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3383g00011 - - gmx:100815224 255.373