Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3381g00034 ATGTCTCACTTTGGAAGGTCGGGTCCTCCGGACATTACCGACACCTATTCGCTTCTAGTTCTCAATATCACATTCCGTACAACCGCTGATGACCTGTTTCCCCTGTTCGATAAGTATGGCAAGGTCGTCGACATCTTTATTCCCAGAGATCGGAGGACCGGTGAATCAAGGGGTTTTGCATTTGTGCGTTATAAGTATGCTGACGAGGCACAAAAGGCTGTGGACAGGCTGGACGGAAGAGTGGTCGATGGCCGCGAGATAACTGTTCAGTTTGCAAAATATGGGCCTAATGCAGAGAGGATTCACAAGGGAAAGATTAGTGAAACGTTCCCCAAGTCTAGGTACAGGTCAAGGAGCCGCAGCCCCAGGAGAAGGTATCGTGATGATTATAGGGACAGGGATTATAGGAAGAGGAGTCGCAGCAGGAGTTATGATAGGTATGAAAGGGATAGGTATCGTGGAAGAGACAGAGATTATCGTCGCAGAAGTAGGAGCCGTAGTGCAAGTCCTGATTACTACAAGAGTCGTGGAAGGGATCGCTATGATGATGATCGCCGAAGCCGAAGCCGATCTGTGGATAGTCTTAGTCCTCGAAGGAGTCCTTCACCTCAAAGGAGTGTTTCCCCTCAAAGAAGTAGTTCTCCAAGGAGGAGCCCAAGGGGTGAAAGCCCTGAGAGTCGTGATGGACGATCACCTACACCTCGCAGTCGCAGTGTTTCACCACGGGGTCATCCCAGGGATTCAAGAAGCCCATCGCCTCGAAATTCTAATGGAGATGAATGA 783 0.4981 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAERIHKGKISETFPKSRYRSRSRSPRRRYRDDYRDRDYRKRSRSRSYDRYERDRYRGRDRDYRRRSRSRSASPDYYKSRGRDRYDDDRRSRSRSVDSLSPRRSPSPQRSVSPQRSSSPRRSPRGESPESRDGRSPTPRSRSVSPRGHPRDSRSPSPRNSNGDE 260
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral3381g00034 260 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 249 - -
Pral3381g00034 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Pral3381g00034 260 MobiDBLite consensus disorder prediction 218 232 - -
Pral3381g00034 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Pral3381g00034 260 SMART rrm1_1 17 90 IPR000504 GO:0003723
Pral3381g00034 260 MobiDBLite consensus disorder prediction 122 193 - -
Pral3381g00034 260 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Pral3381g00034 260 Gene3D - 4 103 IPR012677 -
Pral3381g00034 260 SMART rrm2_1 17 90 IPR003954 GO:0003676
Pral3381g00034 260 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Pral3381g00034 260 CDD RRM_SRSF2_SRSF8 18 90 - -
Pral3381g00034 260 MobiDBLite consensus disorder prediction 102 260 - -
Pral3381g00034 260 MobiDBLite consensus disorder prediction 194 217 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral3381g00034 Pral-Chr3381 232281 235785 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3381g00034 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 1.13e-09 56.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3381g00034 K12891 - pvy:116113546 245.358