Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral3381g00034 | ATGTCTCACTTTGGAAGGTCGGGTCCTCCGGACATTACCGACACCTATTCGCTTCTAGTTCTCAATATCACATTCCGTACAACCGCTGATGACCTGTTTCCCCTGTTCGATAAGTATGGCAAGGTCGTCGACATCTTTATTCCCAGAGATCGGAGGACCGGTGAATCAAGGGGTTTTGCATTTGTGCGTTATAAGTATGCTGACGAGGCACAAAAGGCTGTGGACAGGCTGGACGGAAGAGTGGTCGATGGCCGCGAGATAACTGTTCAGTTTGCAAAATATGGGCCTAATGCAGAGAGGATTCACAAGGGAAAGATTAGTGAAACGTTCCCCAAGTCTAGGTACAGGTCAAGGAGCCGCAGCCCCAGGAGAAGGTATCGTGATGATTATAGGGACAGGGATTATAGGAAGAGGAGTCGCAGCAGGAGTTATGATAGGTATGAAAGGGATAGGTATCGTGGAAGAGACAGAGATTATCGTCGCAGAAGTAGGAGCCGTAGTGCAAGTCCTGATTACTACAAGAGTCGTGGAAGGGATCGCTATGATGATGATCGCCGAAGCCGAAGCCGATCTGTGGATAGTCTTAGTCCTCGAAGGAGTCCTTCACCTCAAAGGAGTGTTTCCCCTCAAAGAAGTAGTTCTCCAAGGAGGAGCCCAAGGGGTGAAAGCCCTGAGAGTCGTGATGGACGATCACCTACACCTCGCAGTCGCAGTGTTTCACCACGGGGTCATCCCAGGGATTCAAGAAGCCCATCGCCTCGAAATTCTAATGGAGATGAATGA | 783 | 0.4981 | MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAERIHKGKISETFPKSRYRSRSRSPRRRYRDDYRDRDYRKRSRSRSYDRYERDRYRGRDRDYRRRSRSRSASPDYYKSRGRDRYDDDRRSRSRSVDSLSPRRSPSPQRSVSPQRSSSPRRSPRGESPESRDGRSPTPRSRSVSPRGHPRDSRSPSPRNSNGDE | 260 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral3381g00034 | 260 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A | 14 | 249 | - | - | |
Pral3381g00034 | 260 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 94 | IPR000504 | GO:0003723 | |
Pral3381g00034 | 260 | MobiDBLite | consensus disorder prediction | 218 | 232 | - | - | |
Pral3381g00034 | 260 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 88 | IPR000504 | GO:0003723 | |
Pral3381g00034 | 260 | SMART | rrm1_1 | 17 | 90 | IPR000504 | GO:0003723 | |
Pral3381g00034 | 260 | MobiDBLite | consensus disorder prediction | 122 | 193 | - | - | |
Pral3381g00034 | 260 | FunFam | Serine/arginine-rich splicing factor SC35 | 4 | 103 | - | - | |
Pral3381g00034 | 260 | Gene3D | - | 4 | 103 | IPR012677 | - | |
Pral3381g00034 | 260 | SMART | rrm2_1 | 17 | 90 | IPR003954 | GO:0003676 | |
Pral3381g00034 | 260 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 100 | IPR035979 | GO:0003676 | |
Pral3381g00034 | 260 | CDD | RRM_SRSF2_SRSF8 | 18 | 90 | - | - | |
Pral3381g00034 | 260 | MobiDBLite | consensus disorder prediction | 102 | 260 | - | - | |
Pral3381g00034 | 260 | MobiDBLite | consensus disorder prediction | 194 | 217 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral3381g00034 | Pral-Chr3381 | 232281 | 235785 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral3381g00034 | 14 | 92 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 35.443 | 1.13e-09 | 56.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral3381g00034 | K12891 | - | pvy:116113546 | 245.358 |