Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3379g00020 ATGAGTTATTGGTCATCAGCATCTGTTTTTAGTAATCGACCCATTCCGTTGTCTCCTGCAAGCACCAAATCTTATGTTACCATCATAAGTGGCACTGGTTTTATGTGTAGTCGAAGCCAAGGGAGGTGCTATCTCTCTGTTTCTGATAACCATTGTAAAATCAGGAGGCTCGGGATTTCTGGGGTACTTAAATCTAGACAAGGATTGACAGATTTTCAGGCGCAACAAGGAACTTGGGAAGAACCTGATGATGGCAGCGGCAGTGAGTATGATGAAGAAGAAGATGAGCAAACAGAAGACGAGAACTATGGCTTTGAAAGTGATTGGGAAGAGGAAGAGATAACGTCGTCAGCTGTTAATGGTGTTAGTTCAGTGGACAACTGTGAGGAGGATTTTAAAAAAGAGGTTGAACAGCTTTTAGAGCCTGAAGAAAGAGCAGTCTTGCAACAGAATGTTACTCCAAACTTGGAAAAAATTTCAACAGAAAAATGGAGCCCACTGCACACTTTAGCGCTATCAACACAGATAAAATGTATGGATCAACTGCTTGAGAGTGGTGTTGGTATTGATCTTAAGAATAAGGAAGGTCTCACTGCACTTCATATAGCTATCATAGGAAAGAAAGAAGCTGTAATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCAAGGACAAGGATGGTGCTACCCCTCTTCATTATGCAGTTCAAGTTGGTGCCAAGCAAACTGTAAAGTTATTGATCAAATATAAGGTTGACGTCAACGTTGCAGATAATGAAGGATGGACTCCGTTGCACATTGCTATCCAAAGCAGAAATAGAGATATTGCAAAAATTTTGTTAGTCAATGGTGCGGATAAGACACGGAGAAACAAGGATGGGAAAACAGCATTGGATCTAAGTTTATGTTACGGGAAGGACTTCAAGTCTTATGAACTTGGCAAATTATTGAAGGTAGTTCCAGCTGACACTGATTTTTGA 984 0.4075 MSYWSSASVFSNRPIPLSPASTKSYVTIISGTGFMCSRSQGRCYLSVSDNHCKIRRLGISGVLKSRQGLTDFQAQQGTWEEPDDGSGSEYDEEEDEQTEDENYGFESDWEEEEITSSAVNGVSSVDNCEEDFKKEVEQLLEPEERAVLQQNVTPNLEKISTEKWSPLHTLALSTQIKCMDQLLESGVGIDLKNKEGLTALHIAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKYKVDVNVADNEGWTPLHIAIQSRNRDIAKILLVNGADKTRRNKDGKTALDLSLCYGKDFKSYELGKLLKVVPADTDF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3379g00020 327 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Pral3379g00020 327 Gene3D - 123 229 IPR036770 -
Pral3379g00020 327 ProSiteProfiles Ankyrin repeat region circular profile. 195 227 - -
Pral3379g00020 327 ProSiteProfiles Ankyrin repeat region circular profile. 228 260 - -
Pral3379g00020 327 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 89 319 - -
Pral3379g00020 327 ProSiteProfiles Ankyrin repeat profile. 228 260 IPR002110 GO:0005515
Pral3379g00020 327 MobiDBLite consensus disorder prediction 84 108 - -
Pral3379g00020 327 Gene3D - 230 308 IPR036770 -
Pral3379g00020 327 ProSiteProfiles Ankyrin repeat profile. 261 293 IPR002110 GO:0005515
Pral3379g00020 327 SMART ANK_2a 195 224 IPR002110 GO:0005515
Pral3379g00020 327 SMART ANK_2a 228 257 IPR002110 GO:0005515
Pral3379g00020 327 SMART ANK_2a 162 191 IPR002110 GO:0005515
Pral3379g00020 327 SMART ANK_2a 261 290 IPR002110 GO:0005515
Pral3379g00020 327 ProSiteProfiles Ankyrin repeat region circular profile. 261 287 - -
Pral3379g00020 327 Pfam Ankyrin repeats (3 copies) 210 292 IPR002110 GO:0005515
Pral3379g00020 327 SUPERFAMILY Ankyrin repeat 154 306 IPR036770 -
Pral3379g00020 327 ProSiteProfiles Ankyrin repeat profile. 162 194 IPR002110 GO:0005515
Pral3379g00020 327 MobiDBLite consensus disorder prediction 72 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3379g00020 Pral-Chr3379 213230 217985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3379g00020 179 287 Ion Channels AT2G25600 30.714 1.91e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3379g00020 - - lja:Lj0g3v0067589.2 401.364