Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3379g00016 ATGGACAACGATTTCTTCCTAAATGCCGCAGCTCTGCACTTCGAGCCTTCTTCGTCTTCCTCTCCTTCAATGCCCACGTGGCATCATTCACTCTCCTCCTCCTCCGCCATGGATATTCCTGTTTCAAGCTCTGAGCAACCCCGACAACAACAACAGGACTGTTTCTACAACCCCACATGGGAAAAGTCAACCTTGGATCATCATCATCCCCACAACCACCATGCCCTTCAGTTCGATTCTGCGTTGAGTTCAATGGTTTCTTCTCCGGCAGCTTCTAATTCCAACTTGTCCAATGACAATTTCGTCATCAGAGAACTGATTGGGAAATTGGGGAACATTGGGAACTCCGGCGAGATCTCTTCTTACATGAATGGAAATAACAGTGCCAACACTTCATGTTACAGCACGCCCTTGAGTTCTCCTCCTAAACTGAACATTCCTCCTCCATTGATGAATAATAACCAGTTGATGAAAGATAAATTACCAATGGCTTTGAACTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGATTTGCTGAGAGAGCTGCCAAGTTTTCTTGCTTTGGAAGTAGGAGCTTTAATGGCAGAACTTCAACGCAACTTGGGATGAATAATAATGCTGACTTGACACAGAGATCTAGTCCATTGATGGAGAATGGAAAGCTTTCAAGAGTATCAAGTAGCCCATCGCTGAAAGCACTTGGATCTCAAATGGACAATAAGAATTCTCCGTTAAATTCTCAGGAGGAATCTACAATCTCTGAGCAAAACCCAAACGTGGAATCGGGGGCGAAACCTTCCCCTCCTGACATGAATTCCAGAAAGAGGAAAGCTTCTTCCAGGGGAAAACCCAAAGAAAATCCTCCCAAGGCTGCTGAAGCCAATGAAGATTCAAGTGCAAAGCGCAGCAAGTCAAATGAAGGGGAAGGACATGAAAACGGACAAGTGAAGGCAGAAGAAGAGACAAAAGGAGGTAACAACAATGGAGGGGATGAGAAACAGAACAAGAGCAACAATTCAAAACCTCCTGAGCCTCCAAAGGACTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCTGAAAGAGTAAGGAGGGAGAAAATCAGTGAGAGAATGAAGCTTCTGCAAGATCTTGTACCTGGTTGCAATAAGGTCACTGGAAAAGCTCTTATGCTTGATGAAATCATAAACTATGTACAGTCATTGCAGCGCCAAGTTGAGTTCCTTTCTATGAAATTGGCCTCCGTGAACAGCAGGCTAGATGTGAGCATTGACAATCTCATCTCAAAAGATATATTTCAATCAAATAACTCTTTGGCACACCAAGCAGCAATGTTCCCCTTAGATTCCTCTGCCACAGCCTTTTATGGCCCCAATCCAGCAATCCACGATACCATCCCTAATGGAACTGAGACCCACTCTATGGAATCTTTAGATTCTGCTCTCTGCCAAAGCCTTGGCTTCCAGTTACCCGCTCTGAATGGGTTAAATGGAGGTGCTTCTCAGTATCCAATGACCTTTTGTGAGGAAGACCTCCACGCCATTGTTCAGATGGGGTTTGGTCAAACAGAAAATAGAAAAACACCAGCACAATCTCCAAGCTTTAATGGTTCAAGCCAGATACCCCATATGAAAGTTGAGCTCTGA 1665 0.4462 MDNDFFLNAAALHFEPSSSSSPSMPTWHHSLSSSSAMDIPVSSSEQPRQQQQDCFYNPTWEKSTLDHHHPHNHHALQFDSALSSMVSSPAASNSNLSNDNFVIRELIGKLGNIGNSGEISSYMNGNNSANTSCYSTPLSSPPKLNIPPPLMNNNQLMKDKLPMALNSSVAEFSADPGFAERAAKFSCFGSRSFNGRTSTQLGMNNNADLTQRSSPLMENGKLSRVSSSPSLKALGSQMDNKNSPLNSQEESTISEQNPNVESGAKPSPPDMNSRKRKASSRGKPKENPPKAAEANEDSSAKRSKSNEGEGHENGQVKAEEETKGGNNNGGDEKQNKSNNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNSRLDVSIDNLISKDIFQSNNSLAHQAAMFPLDSSATAFYGPNPAIHDTIPNGTETHSMESLDSALCQSLGFQLPALNGLNGGASQYPMTFCEEDLHAIVQMGFGQTENRKTPAQSPSFNGSSQIPHMKVEL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3379g00016 554 SMART finulus 364 414 IPR011598 GO:0046983
Pral3379g00016 554 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 358 408 IPR011598 GO:0046983
Pral3379g00016 554 Gene3D - 355 431 IPR036638 GO:0046983
Pral3379g00016 554 MobiDBLite consensus disorder prediction 529 554 - -
Pral3379g00016 554 MobiDBLite consensus disorder prediction 328 342 - -
Pral3379g00016 554 CDD bHLH_AtBPE_like 348 433 - -
Pral3379g00016 554 MobiDBLite consensus disorder prediction 15 51 - -
Pral3379g00016 554 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 426 IPR036638 GO:0046983
Pral3379g00016 554 MobiDBLite consensus disorder prediction 270 327 - -
Pral3379g00016 554 Coils Coil 405 425 - -
Pral3379g00016 554 MobiDBLite consensus disorder prediction 529 547 - -
Pral3379g00016 554 MobiDBLite consensus disorder prediction 195 263 - -
Pral3379g00016 554 FunFam Basic helix-loop-helix transcription factor 355 427 - -
Pral3379g00016 554 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 249 458 IPR024097 GO:0006355
Pral3379g00016 554 Pfam Helix-loop-helix DNA-binding domain 362 409 IPR011598 GO:0046983
Pral3379g00016 554 MobiDBLite consensus disorder prediction 195 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3379g00016 Pral-Chr3379 155068 158339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3379g00016 1 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 48.734 3.78e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3379g00016 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3379g00016 - - gmx:100812081 675.626