Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3379g00009 ATGGCAAAGTCTGGCGTGGTGGCGGTGGACCCTGATCCGACGGCGGCGACGAAGATGTCGGAGTTGAAGAAGGAGTTGAACAGATTGGTGAACTCCATCGTCGATGATGATGATTGCAGCGTTCAAACCATTGATCAAGCTAATGAAGCTCTTTCCGCTCTTAAGGACCTCAAGCTTCGAAGGAGATCATCGTCATCGCCATCTTCACAATCTTCGTCCTTGAAGTTAAACGGAAATTCCGCTTTTCCAGAAGAATTTAAGTGTCCTCTTTCTAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGAAAGACATATGATAGGCCCTTTATTCAAAAATGGCTGAAAGCTGGGAACAGAACTTGTCCTCAAACCCAACAAGTCCTCTCACACGCTGTCCTAACTCCAAATCACCTCATAAGGGAGATGATAGAACAGTGGTGCAAGAACCATGGGGTGGAATTATCCAACCAACTTCACTATGTTTACAATGAGGAAGAGATAATAACAAAAGCAGATCGTGATCATTTTCATTCTCTGCTTGAGAAAATGTCCTCATCATCACTTTCTGAGGAGAAAGCAGCCGCAAAGCAGCTTCGGTTATTGACAAAGAAGATGCCTTTGTACAGAACACTCTTTGGTGAAACTTCACAAGCCATTTCTGAGATTCTCAAACCAATCTCTGCAAGCGACTCTTTTAACAACATCCATCCTGATCTCCAAGAAGACGTGATCACAACACTTTTGAACATCTCAATCCATGACGACAACAAGAAACTTGTCGCAGAAACTCCCTTGGTGATTCCACTCCTTGTGAAGGCCTTAAAGTCAGGAACTATAGAAACTAGAAGCAATTCTGCAGCTACCCTCTTCACTTTATCTGCTCTAGACTCAAACAAGGAGCTTATAGGTAAATCCGGTGCCTTAAAGCCATTAATTGACCTGTTAGAAGAAGGCCATCCTTTAGCCATGAAAGATGCTGCTTCAGCACTTTTCACCTTGTGTGTGGTTCATGAGAACAAGGCAAGAGCAGTGAGGGAAGGGGCAGTAGGTGTTATACTGAGGAAGATCTCAAGCCGGGTTTACGTAGACGAATTGCTCGCGATCCTCGCACTGCTCTCGAGTCATCAAAAGGCTGTTCAGGACATGGTAGATCTTGCAGCTGTTCCTAACTTGCTTAGCATCATGAGGGAGAGCAATTGTGAAAGAAACAAGGAGAACTGCATAGCTATTCTTCAAACTATATGTCAGTATGACAGAGCAAAGTTGAAGGAGATAAAAGAAGAGGAGATTACCTTTAAAACTATCACTGATCTTGCATTGAATGGAACTTCAAGGGCTAAGAGGAAGGCTAGTGGAATTCTTGAGAGACTGAATAGGGCTGTTAATATTACACATACTGCATAA 1410 0.434 MAKSGVVAVDPDPTAATKMSELKKELNRLVNSIVDDDDCSVQTIDQANEALSALKDLKLRRRSSSSPSSQSSSLKLNGNSAFPEEFKCPLSKELMRDPVIVASGKTYDRPFIQKWLKAGNRTCPQTQQVLSHAVLTPNHLIREMIEQWCKNHGVELSNQLHYVYNEEEIITKADRDHFHSLLEKMSSSSLSEEKAAAKQLRLLTKKMPLYRTLFGETSQAISEILKPISASDSFNNIHPDLQEDVITTLLNISIHDDNKKLVAETPLVIPLLVKALKSGTIETRSNSAATLFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDAASALFTLCVVHENKARAVREGAVGVILRKISSRVYVDELLAILALLSSHQKAVQDMVDLAAVPNLLSIMRESNCERNKENCIAILQTICQYDRAKLKEIKEEEITFKTITDLALNGTSRAKRKASGILERLNRAVNITHTA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3379g00009 469 Pfam U-box domain 83 152 IPR003613 GO:0004842|GO:0016567
Pral3379g00009 469 FunFam RING-type E3 ubiquitin transferase 168 465 - -
Pral3379g00009 469 SMART Ubox_2 85 148 IPR003613 GO:0004842|GO:0016567
Pral3379g00009 469 CDD RING-Ubox_PUB 83 135 IPR045210 -
Pral3379g00009 469 PANTHER U BOX DOMAIN-CONTAINING 25 459 - -
Pral3379g00009 469 FunFam RING-type E3 ubiquitin transferase 81 155 - -
Pral3379g00009 469 Gene3D - 217 363 IPR011989 -
Pral3379g00009 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 155 IPR013083 -
Pral3379g00009 469 Gene3D - 364 464 IPR011989 -
Pral3379g00009 469 SMART arm_5 297 337 IPR000225 GO:0005515
Pral3379g00009 469 SMART arm_5 255 296 IPR000225 GO:0005515
Pral3379g00009 469 SMART arm_5 377 418 IPR000225 GO:0005515
Pral3379g00009 469 ProSiteProfiles U-box domain profile. 81 155 IPR003613 GO:0004842|GO:0016567
Pral3379g00009 469 SUPERFAMILY ARM repeat 174 459 IPR016024 -
Pral3379g00009 469 SUPERFAMILY RING/U-box 81 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3379g00009 Pral-Chr3379 112451 115549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3379g00009 144 469 U-box Gene Family AT3G07360 60.909 5.83e-135 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3379g00009 - - gmx:100777031 630.557