Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3379g00008 ATGCTTATACGGAGGTATTTTTCGGATTTGGATTTTGATGCAATTACTCTAATGCCCAACAATCCGGTTTATTTCACGAATCGTGCTCTATGCCATCGCAAGCGGAATGACTGGACAAGAGTGGAGGAAGATTGTCGGAAAGCTATTCAACTAAATCACAATTCAGTCAAGGCCCACTATATGTTGGGACTTGCTTTGCTGCAGAGACAAGAATATGCAAAGGGAATAGCAGAATTAGAGAAGGCTTTAGATCTTGGGAGGGGAGCCAATCCTAAGGGCTATATGGTAGAAGAGATCTGGCAGGAGCTATCGAAAGCAAAATACCTAGAATGGGAACGTTCATCTACCGAGCGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGCGAGTCTGCTTTAAAGGAAAGGAGTCTACATGGCATCTCCCAAGAGGAAGGCTTGATAGATGAAGATCCAACCACCCTTTCAGAACAGCTCGAGGCTTTAGGAAGAGTGTTTGGTAAAGCTGCAGAGGACGATACACCCACTGAGGTGCCAGATCACCTTTGCTGTAGAATTACGCTTGAACTTTTCCGGGATCCTGTCATCACTCCTAGTGGTCTTACGTATGAGAGGGCAGTGATTCTTGACCATCTTGAAAAGGTGGGTAGGTTTGATCCAGTCACCCGAGAACCGCTTAATCCATCCCAGTTAGTACCAAACTTGGCCATAAAGGAAGCAGTCCGGGCATTCTTGGATAAACATGGATGGGCCTACAAGATAGACTAA 768 0.4544 MLIRRYFSDLDFDAITLMPNNPVYFTNRALCHRKRNDWTRVEEDCRKAIQLNHNSVKAHYMLGLALLQRQEYAKGIAELEKALDLGRGANPKGYMVEEIWQELSKAKYLEWERSSTERSWELQSLKEACESALKERSLHGISQEEGLIDEDPTTLSEQLEALGRVFGKAAEDDTPTEVPDHLCCRITLELFRDPVITPSGLTYERAVILDHLEKVGRFDPVTREPLNPSQLVPNLAIKEAVRAFLDKHGWAYKID 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3379g00008 255 SUPERFAMILY RING/U-box 170 252 - -
Pral3379g00008 255 ProSiteProfiles U-box domain profile. 177 251 IPR003613 GO:0004842|GO:0016567
Pral3379g00008 255 Pfam U-box domain 178 250 IPR003613 GO:0004842|GO:0016567
Pral3379g00008 255 SMART Ubox_2 181 244 IPR003613 GO:0004842|GO:0016567
Pral3379g00008 255 SUPERFAMILY TPR-like 14 85 IPR011990 GO:0005515
Pral3379g00008 255 CDD RING-Ubox_CHIP 178 248 IPR045202 -
Pral3379g00008 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 13 253 IPR045200 GO:0000209|GO:0061630
Pral3379g00008 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 254 IPR013083 -
Pral3379g00008 255 SMART tpr_5 56 89 IPR019734 GO:0005515
Pral3379g00008 255 SMART tpr_5 22 55 IPR019734 GO:0005515
Pral3379g00008 255 Pfam Anaphase-promoting complex, cyclosome, subunit 3 18 82 - -
Pral3379g00008 255 Gene3D Tetratricopeptide repeat domain 12 118 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3379g00008 Pral-Chr3379 103711 109320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3379g00008 9 254 U-box Gene Family AT3G07370 68.293 7.87e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3379g00008 K09561 - sind:105170112 392.504