Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3379g00007 ATGGGGCCAAATGCAGGTTCTTTGTCGGCGGTGGCGAAACAGGCGGAGCAACTTCGAATAAACGGCAATAATTATTTCAAGAAAGATCGGTTCGGAGCTGCCATCGATGCTTATACGGAGGCAATTACTCTAATGCCCAACAATCCGGTTTATTTCACGAATCGTGCTCTATGCCATCGCAAGCGGAATGACTGGACAAGAGTGGAGGAAGATTGTCGGAAAGCTATTCAACTAAATCACAATTCAGTCAAGGCCCACTATATGTTGGGACTTGCTTTGCTGCAGAGACAAGAATATGCAAAGGGAATAGCAGAATTAGAGAAGGCTTTAGATCTTGGGAGGGGAGCCAATCCTAAGGGCTATATGGTAGAAGAGATCTGGCAGGAGCTATCGAAAGCAAAATACCTAGAATGGGAACGTTCATCTACCGAGCGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGCGAGTCTGCTTTAAAGGAAAGGAGTCTACATGGCATCTCCCAAGAGGAAGGCTTGATAGATGAAGATCCAACCACCCTTTCAGAACAGCTCGAGGCTTTAGGAAGAGTGTTTGGTAAAGCTGCAGAGGACGATACACCCACTGAGGTGCCAGATCACCTTTGCTGTAGAATTACGCTTGAACTTTTCCGGGATCCTGTCATCACTCCTAGTGGTCTTACGTATGAGAGGGCAGTGATTCTTGACCATCTTGAAAAGGTGGGTAGGTTTGATCCAGTCACCCGAGAACCGCTTAATCCATCCCAGTTAGTACCAAACTTGGCCATAAAGGAAGCAGTCCGGGCATTCTTGGATAAACATGGATGGGCCTACAAGATAGACTAA 849 0.4653 MGPNAGSLSAVAKQAEQLRINGNNYFKKDRFGAAIDAYTEAITLMPNNPVYFTNRALCHRKRNDWTRVEEDCRKAIQLNHNSVKAHYMLGLALLQRQEYAKGIAELEKALDLGRGANPKGYMVEEIWQELSKAKYLEWERSSTERSWELQSLKEACESALKERSLHGISQEEGLIDEDPTTLSEQLEALGRVFGKAAEDDTPTEVPDHLCCRITLELFRDPVITPSGLTYERAVILDHLEKVGRFDPVTREPLNPSQLVPNLAIKEAVRAFLDKHGWAYKID 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3379g00007 282 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Pral3379g00007 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Pral3379g00007 282 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Pral3379g00007 282 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Pral3379g00007 282 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Pral3379g00007 282 Pfam Anaphase-promoting complex, cyclosome, subunit 3 43 109 - -
Pral3379g00007 282 SUPERFAMILY RING/U-box 197 279 - -
Pral3379g00007 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Pral3379g00007 282 SUPERFAMILY TPR-like 14 114 IPR011990 GO:0005515
Pral3379g00007 282 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Pral3379g00007 282 CDD RING-Ubox_CHIP 205 275 IPR045202 -
Pral3379g00007 282 SMART tpr_5 83 116 IPR019734 GO:0005515
Pral3379g00007 282 SMART tpr_5 49 82 IPR019734 GO:0005515
Pral3379g00007 282 SMART tpr_5 15 48 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3379g00007 Pral-Chr3379 103685 109320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3379g00007 15 281 U-box Gene Family AT3G07370 70.037 5.28e-142 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3379g00007 K09561 - qsa:O6P43_016950 454.521