LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3364g00009	ATGTTTCAACCTCATCTGCTTCCTCTAATCACCTTCATGTTCTGGTCATGGCAGATTCTTGAGGGCGTCGTTTCGGACCCCCAGATCAATTTTTTGACCAGAGGGTGCAACCCATACAACGAATACCTGGTGGCCAACGTCTCCCTCTTTGAAGCAAACATCAACGCAACGCTGCGAGACATCAGAGAGCAGATCAGTGGTCAAAACAAGCACTTCGCCACCGCACAGCAAGCTGCCAGTGGTGGAAACACCGTCTCTAGTCTTTTTCAATGTAGAAGCTATCTCTCCATCCCCGACTGCGTCGCCTGCTTCGACGTTGCTACCCCTCAAATCCTCAGCTGTGCTGCCGGCGAACCAGGTGGCCGTGTTGTCTACGACGGATGCTACCTCAGGTACGACATTAGTGTCGCTTTCTTTGGTGCTACAACACAGTCTATCAATAGTGCATCATGCGGGAATAAGACTACAACAGAAGAACCTGCTACTTCATTTACCTCAGCTGTTCAACAAATTCTAATGAATCTCCAAACAGCAACTCCCCGAATCACTGGCTTCTCTGTAGCTACCAAGACACAAGTTCCTAATAGTGGTCCAACTATTTATGCATTTGCTCAGTGTACAGAAACTATCACTCAGAGTGAGTGCCAGAACTGCTTGAATGTTCTAGACAACAATATGCAGAGTTGTCTTCCCAATTCAGAAGGTAGGGCTTTTGCTGATGGCTGTTTCTTGAGATATTCCACAACCTCCTTCTTTGCTGATAATCAGACTATTGATATCGCACCCTCCTTCAAGCAAGGTTCAAGCAATAATAAGGGAGCCATTATAGGGGGTGTTGTTGGAAGCGGAGTAGTTCTTGCTTTGATCTTTGTTGCATTGTACGTCTGGATGAGACCACTAAAAAGGCCAACTAGGAGGGTTCCTAGAGGAGACGTTATAGGAACAAGCAAGTTGAAAGGCCCATCTATTTATAATTATAACGACCTGAAGACTGCAACCAAGAACTTCAGCGAAGAAAACAAGCTAGGACAAGGAGGATTTGGTGTTGTGTATAAGGGCACTTTGAAGAACGGAAAAGAAATTGCAATCAAGAAATTAACATTTCGTCATTTCACGAGGATGGAGGAGGAATTTGAAAATGAAGTGAAGCTTATAAGCAATGTTCATCATCGGAATCTCGTTCGACTCCTGGGATATTGTATTGATGGCAAAACTAGAATTCTTGTTTATGAATACATGAAAAATAGCAGTCTTGACATATTCTTATTCGGTGAAATGAAAGGCTCACTCAATTGGAAGCAACGATATGATATAATTTTAGGCATTGCAAGGGGTCTAGCCTATTTACATGAGGAATTCTATGTTTGTATCATACATAGAGATGTAAAACCTAATAACATTCTCTTGGATGAGGATCTTCAACCTAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTTCCTGAGGACAAAACTCATCTCAGCACCAACTTCGCTGGAACATTAGGATATTCAGCACCGGAGTATGTAATTCACGGCCAATTATCTGAGAAGGTTGATGTTTATAGTTATGGTGTTGCGATCTTGGAGATTATAAGTGGCCAAAAAAATAAGAAACTAGGAGTTGATGGTGATAATGAAGGCGAATTCCTCCTCCGAAAAGTAAGAAAATTCTTATGGCTAAATAGAAAGACATATTTCAAGGAAAATTAG	1710	0.4234	MFQPHLLPLITFMFWSWQILEGVVSDPQINFLTRGCNPYNEYLVANVSLFEANINATLRDIREQISGQNKHFATAQQAASGGNTVSSLFQCRSYLSIPDCVACFDVATPQILSCAAGEPGGRVVYDGCYLRYDISVAFFGATTQSINSASCGNKTTTEEPATSFTSAVQQILMNLQTATPRITGFSVATKTQVPNSGPTIYAFAQCTETITQSECQNCLNVLDNNMQSCLPNSEGRAFADGCFLRYSTTSFFADNQTIDIAPSFKQGSSNNKGAIIGGVVGSGVVLALIFVALYVWMRPLKRPTRRVPRGDVIGTSKLKGPSIYNYNDLKTATKNFSEENKLGQGGFGVVYKGTLKNGKEIAIKKLTFRHFTRMEEEFENEVKLISNVHHRNLVRLLGYCIDGKTRILVYEYMKNSSLDIFLFGEMKGSLNWKQRYDIILGIARGLAYLHEEFYVCIIHRDVKPNNILLDEDLQPKIADFGLARLLPEDKTHLSTNFAGTLGYSAPEYVIHGQLSEKVDVYSYGVAILEIISGQKNKKLGVDGDNEGEFLLRKVRKFLWLNRKTYFKEN	569

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3364g00009	569	ProSiteProfiles	Protein kinase domain profile.	336	569	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3364g00009	569	Gene3D	Transferase(Phosphotransferase) domain 1	413	565	-	-
	Pral3364g00009	569	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	89	556	-	-
	Pral3364g00009	569	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	457	469	IPR008271	GO:0004672\|GO:0006468
	Pral3364g00009	569	Gene3D	-	29	135	IPR038408	-
	Pral3364g00009	569	Gene3D	-	143	251	IPR038408	-
	Pral3364g00009	569	Pfam	Salt stress response/antifungal	41	133	IPR002902	-
	Pral3364g00009	569	Pfam	Salt stress response/antifungal	151	248	IPR002902	-
	Pral3364g00009	569	ProSitePatterns	Protein kinases ATP-binding region signature.	342	365	IPR017441	GO:0005524
	Pral3364g00009	569	FunFam	Cysteine-rich receptor-like protein kinase 2	146	251	-	-
	Pral3364g00009	569	Pfam	Protein kinase domain	337	535	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3364g00009	569	FunFam	Cysteine-rich receptor-like protein kinase 2	303	412	-	-
	Pral3364g00009	569	ProSiteProfiles	Gnk2-homologous domain profile.	29	137	IPR002902	-
	Pral3364g00009	569	Gene3D	Phosphorylase Kinase; domain 1	312	412	-	-
	Pral3364g00009	569	SMART	serkin_6	336	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3364g00009	569	ProSiteProfiles	Gnk2-homologous domain profile.	145	251	IPR002902	-
	Pral3364g00009	569	SUPERFAMILY	Protein kinase-like (PK-like)	321	543	IPR011009	-
	Pral3364g00009	569	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	413	542	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3364g00009	Pral-Chr3364	107436	110686	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3364g00009	5	538	Receptor kinase-like Gene Family	AT1G70520	40.111	8.15e-109	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral3364g00009		Pkinase	2.9e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3364g00009	-		-	gmx:100811953	674.085