Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3360g00020 ATGGCACCAGTTTCATTTCCTCCGGGATTCAGATTCCACCCTACAGATGAAGAGCTCGTTGCTTACTATCTGAAAAGAAAGATTAACGGCCTCAAGATTGAGTTAGAGATCATCCCTGAAGTTGATCTCTACAAGTGCGAACCATGGGACTTGCCAGGGAAATCGCTGTTACCAGGGAAAGACTTGGAGTGGTATTTCTTCAGTCCTCGAGATAGGAAATATCCAAACGGATCAAGAACGAACAGAGCCACAAGATCTGGGTATTGGAAGGCCACAGGAAAAGACAGGAAAGTGAATTCACAGAGTAGAGCAGTGGGCATGAAGAAAACCCTAGTTTATTATCGAGGAAGAGCCCCACATGGCTCTCGTACTGGTTGGGTCATGCATGAGTATCGTCTTCACGAGCGAGAATGTGATCCTGCTTCTTCTGGCATGCAGGAGGCATATTCTCTGTGCCGTGTGTTTAAGAAGAGCGCAGTGATAAGTCCAAAGATAGAAGAGCAGTATGTGAGGAGCAATCATGGGAATTATCATAATCAGCAGCAGCAGATGGGTAGTGATCAGACGTCATCAAGCATTAATGACTTTTACTCTGAAGGAAGAGGCGAAGACTTCGACAGCTCCAACAATTACTTGATGCCTCTTGATCATCGTCATCATCATCAGTCAGCCTACATGATGCAGCATCCAAATGGGACGACCAGCAGCTTCAATAATGTCAATTCTTCATGTGGAATCACTTCACAACATGCGAATCCTACTAGTTGGTCGCAGTTCTTGTCTGATGATCCATTGTTAAGCCTCCCAACAACGTCTTCATTTCCCAATTATGGAGCCATATCCTATCCTCCCTCCAAGGTGGACATAGCTTTAGAATGCGCAAGGATGCAGAATAGGTTCAGTATGCCTCCATTGGAAGTGGAGGACTTCCCTCAAGTTGGGATTTCTGAACTGAGGATGCCACAACAACAACCTCATCATTCTGGGGCCATAGTTCATGGAAGCAGAACTGAAACAACAACAACAGATATTTTGCAGGAGATTCTATCAGTAGCTCATGCTTCTCAGGAGCTCATTAATCAGAACTCAAACTATTCATCAGCCACCACTTGGGGCGGCGGCGGCGAAAACTATGCTCGTGAAGAAGATGATGACTTCACCTTCATGGTGGGAAGAGGAAGTGGTGATGATCAGAACTATAATTACAGCCACCATGTGAGTGACTTGAGTTCCATGATGAGAGGCATTAATAATAATGAGGCTACTACATGGGAAGATCAGAGCACAGCCAGGCCAATAGAGATTGCGGATTTGGATGATGAGTTCAAGGCAGAGAGGATGGTGGAGAACTTGAGATGGGTTGGAATGTCAACCAAAAATACGGATAAGAGCTTTATGGAAGATCAAAAGATTGTTCCTATTGAGGATATTACAAATTTCCAAATAAATAAGGAAGACAATGACGTGCAAGAATCTGTGCAGCACCAGAGCAACGACATGAATGACTTCTCATTGGGATTCATCAATTATGATGAACCAAATGAGAACTTCATAGATGAAGGTACCCCCATGGATGACTATTCAAGCTCTCCAAGCTGCTTTGAGGTTGTTGAGGAAGTAAAAGTCAGCCACGGAATGTTTGTGGCAACTCGCCAAGCAGCTGAGACATTCTTTCACCAGATAGTTCCTTCACAAACCCTCAAGGTTCATCTCAACCCAATAACGGCAACTAACACTACTCTTTCATCAGAAAATGCAGAAACAGCAGAGACAGAAACACTGAGAATGGAGAACCAAGGGTCCTATTTCACGAAACTTAAAGACTATGTGACGGGAAAGCTAATAATGAAGCCTTCAAAGACCGCTAGTGCTATTATGTTCATATTTGCATTTCTCTTGATGCACTTTGCTTCATATTTGGAGGCGCATGCGCAAATCTTGAAACTAGATCCTCAAGATGAAGATGTCAAAGAGAAACATTGCTCTTGTGCCAGCAGCAAGAAGGAATTCTCATGGAATGGGAAAGAAGGGGTTTGGTTTGTTGGTATCAAAAGTGGAAGAGGGTTTAGTGTGGTGTTGAAGAAGATAGGGATTTTCCTCACAATTTCTTTAGCACTTTGCACTATGTGGGCTAACCACATCACCGTTGATTAA 2154 0.4369 MAPVSFPPGFRFHPTDEELVAYYLKRKINGLKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATRSGYWKATGKDRKVNSQSRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLHERECDPASSGMQEAYSLCRVFKKSAVISPKIEEQYVRSNHGNYHNQQQQMGSDQTSSSINDFYSEGRGEDFDSSNNYLMPLDHRHHHQSAYMMQHPNGTTSSFNNVNSSCGITSQHANPTSWSQFLSDDPLLSLPTTSSFPNYGAISYPPSKVDIALECARMQNRFSMPPLEVEDFPQVGISELRMPQQQPHHSGAIVHGSRTETTTTDILQEILSVAHASQELINQNSNYSSATTWGGGGENYAREEDDDFTFMVGRGSGDDQNYNYSHHVSDLSSMMRGINNNEATTWEDQSTARPIEIADLDDEFKAERMVENLRWVGMSTKNTDKSFMEDQKIVPIEDITNFQINKEDNDVQESVQHQSNDMNDFSLGFINYDEPNENFIDEGTPMDDYSSSPSCFEVVEEVKVSHGMFVATRQAAETFFHQIVPSQTLKVHLNPITATNTTLSSENAETAETETLRMENQGSYFTKLKDYVTGKLIMKPSKTASAIMFIFAFLLMHFASYLEAHAQILKLDPQDEDVKEKHCSCASSKKEFSWNGKEGVWFVGIKSGRGFSVVLKKIGIFLTISLALCTMWANHITVD 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3360g00020 717 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Pral3360g00020 717 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Pral3360g00020 717 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Pral3360g00020 717 MobiDBLite consensus disorder prediction 177 199 - -
Pral3360g00020 717 FunFam Nac domain-containing protein 86 15 160 - -
Pral3360g00020 717 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 221 - -
Pral3360g00020 717 MobiDBLite consensus disorder prediction 177 197 - -
Pral3360g00020 717 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3360g00020 Pral-Chr3360 130973 136047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3360g00020 1 709 NAC Transcription Factor Family AT1G65910 42.798 1.47e-161 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral3360g00020 NAM 1.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3360g00020 - - pcin:129299856 1150.58