Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3360g00018 ATGCTGCTGAATTCACAAAGGTACACAGCGTTTGTGCAAGTCCTACTTTGTCACTTTCAGAGAGATATTCTTAGCAAGAGTAGGTCAACATATGTTGATACAGAATATCAGAAGGATTTGCCCTATAGGTATCTTGTGCCTGCCACCTCTCCACGTGTAGCAAATAACAATATATTGAAAGATGTCATGATCTGGGGTGGGGGGATTGTCAGAATTGCAGGGAGTGGGAATGACCAGCTTGTCGACCAGCAGGGAGCTCATATGCTGTTGCCAAAGTTACTAGAATCCACTATGATGTTAGATGTAGAAAACATTGCATTAGGAGAAAAACACGCTGTACTTGTTACAAAGCAAGGAGAAGTGTTAAGCTGGGGCGAGGGGAAAGGAGGAAGGCTGGGGCTCAAAGTTGATATAGATATAACCTCTCCCAAAATTGTTGATTCTCTTAATGGGGTGCATGTAAAGGATGTTGCCTGTGGTGAGTACCATGCGTGTGCTTTGACAGATTCTGGCGAAGTATATGCATGGGGGAATAGTGGTTGTGTTGCAGATCAGTTTGGTGAAGGGAGATTCAAAACTCAATGGATACCACACAAACTCTCTGGTCCTTTAGATGGTATTATTATAGCACATGTCACTTGTGGGGAATGGCATACAGCAATTGTCTCATCTTGCGGACGGCTATTTACATATGGGGATGGTACATTTGGAGTTCTTGGGCATGGGAATTCTCTGAGCATTCCTCAACCAAAAGAAGTTGAATCTCTTAAGGGTCTATGGGTGAGGTCTGTTGCTTGTGGATCGTGGCACACAGCAGCAATTGTTGAAGTCATGGTTGACCGCTTTAGGTACAATACTGGTAAGCTGTTCACTTGGGGTGATGGAGAGAAAGGGATGCTTGGCCATGCTGATAACGGGAGGAAGCTCTTGCCAACCTGTGTTTCACAACTGCTGGATTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTAATATGGGTAAAGTTTTCACAATGGGAAGTGCAGTGCATGGACAGCTAGGAAGTCCACGTGCCAAGGATAAATCAGTGACAATTGTTGAAGGACTTCTTAAACAGGAGTTTGTGAAAGAGATATCATCAGGTTCATATCACGTTGCTGTCTTGACATCTTCCAGGAGTGTCTATACATGGGGAAAGGGTGCAAATGGACAGCTAGGGTTAGGTGACACCGAGGACAGGTACTCACCATCTTTTGTTGTGGCTCTAAGAGACTGGCAGGTAGAGAGTATTGCTTGTGGACCAAGCAGCACAGCTGCTATCTGTTTACACAAACCAATTTCTATTAGTGACCAGTCAGCTTGTAGTGGTTGTAAATTGCCCTTTGGATTTACAAGGAAGAAGCATAATTGCTATAATTGTGGCCTCCTATTTTGTCATCCATGCAGTAGTAAAAAGGTTACTGATGCAGCTCTGGCACCAAATAAGAACAAGGCTTTTCGGGTTTGTGACCAATGCTTCAATAAGCAGCTTGGAAGTACACCTTCAGTTGCGGCTTCCAGGTCAAGAAATTACAATTCTCAAAAGGTGCTGAAGAATCAGAACAAGTTTACTGATTTTACAGAAGATAGAGGAGAAACAGCAGTGACACAGGGTCCACTGTTGTCTCTTGGTCAATCATGCTACAAAAGAAGCATGCCAGGTGGAAGAAAAGAGTGGAAAAACCAGCAAGAAAGCCAGCAGAATTTAGAAAATATTTCTTCTCTATCTGGTGGAATGCCGAAATGGGGGCAAGTTACATGCCCTGCCCTGTTTAAAAATTGTACAGAAAATTCTGTTTCATCATTTAGAAATAAATTAGGTTCTCTTACTTCAGTGCATTTAGAGTATACTTTATCCAACAATTTGTATGGAGAGAAAGATGCCACAAAGTCTGATAATACATTGATAGAAGAAGTTCAGAGGCTAAGAGCTGAGGCTAGAATCCTTGAAGAGCAATGTGAGATAGGAAACCGTAAGTTACAAGAATGTCATAAAAAGATTGAGGAGACTTGGCTATTGGCAAAGGAGGAGGCTGCAAAGAGCAAGGCAGCGAAAGAGGTCATAAAAGCCTTGGTATTAAGGCTTTTGCAGTTGCAAACAGTATCAGATAAAACCATAGCCGAACAAGACGGAAAGCTGGGGATACAGGAATGTCTGTCAAATTTAACACGCATTCGTACGGATATCAATTCTACAAATGATGGCAATGTGGACAGTCTATCAAATTCCCCTATCGTGTTCTCTGACTCGTTAAAATCCAAACTTGCGAGAAGTTCAATCCTTAAAGGTGATAGATCAAAGGAGGATTCTCAGTTAACTAAAGCAGAATCTCATGAAGATGGCTCTGAGGGCTCGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTCTACATCACTTTAACTGCCTTGCCATGTGGGCAGAAGGGCCTTAAGAGAGTTAGATTCAGCCGGAAACAATTTTCTGAGAAGGAAGCCGAGAGATGGTGGGAGAAGAATCAAGCCGCAGTGTATCAGAAGTATGGGATTCAAGGATGTATAAAGACAAGCCAAAACTGGGAGAAGGGCTAA 2607 0.4269 MLLNSQRYTAFVQVLLCHFQRDILSKSRSTYVDTEYQKDLPYRYLVPATSPRVANNNILKDVMIWGGGIVRIAGSGNDQLVDQQGAHMLLPKLLESTMMLDVENIALGEKHAVLVTKQGEVLSWGEGKGGRLGLKVDIDITSPKIVDSLNGVHVKDVACGEYHACALTDSGEVYAWGNSGCVADQFGEGRFKTQWIPHKLSGPLDGIIIAHVTCGEWHTAIVSSCGRLFTYGDGTFGVLGHGNSLSIPQPKEVESLKGLWVRSVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGEKGMLGHADNGRKLLPTCVSQLLDYDFVQVSCGRMLTVALTNMGKVFTMGSAVHGQLGSPRAKDKSVTIVEGLLKQEFVKEISSGSYHVAVLTSSRSVYTWGKGANGQLGLGDTEDRYSPSFVVALRDWQVESIACGPSSTAAICLHKPISISDQSACSGCKLPFGFTRKKHNCYNCGLLFCHPCSSKKVTDAALAPNKNKAFRVCDQCFNKQLGSTPSVAASRSRNYNSQKVLKNQNKFTDFTEDRGETAVTQGPLLSLGQSCYKRSMPGGRKEWKNQQESQQNLENISSLSGGMPKWGQVTCPALFKNCTENSVSSFRNKLGSLTSVHLEYTLSNNLYGEKDATKSDNTLIEEVQRLRAEARILEEQCEIGNRKLQECHKKIEETWLLAKEEAAKSKAAKEVIKALVLRLLQLQTVSDKTIAEQDGKLGIQECLSNLTRIRTDINSTNDGNVDSLSNSPIVFSDSLKSKLARSSILKGDRSKEDSQLTKAESHEDGSEGSKVEWVEQYEPGVYITLTALPCGQKGLKRVRFSRKQFSEKEAERWWEKNQAAVYQKYGIQGCIKTSQNWEKG 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3360g00018 868 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 119 170 IPR000408 -
Pral3360g00018 868 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 447 509 IPR017455 -
Pral3360g00018 868 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 52 706 - -
Pral3360g00018 868 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 171 225 IPR000408 -
Pral3360g00018 868 MobiDBLite consensus disorder prediction 774 798 - -
Pral3360g00018 868 Gene3D - 48 182 IPR009091 -
Pral3360g00018 868 Gene3D - 183 280 IPR009091 -
Pral3360g00018 868 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 339 390 IPR000408 -
Pral3360g00018 868 Coils Coil 644 671 - -
Pral3360g00018 868 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Pral3360g00018 868 ProSiteProfiles BRX domain profile. 799 854 IPR013591 -
Pral3360g00018 868 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 264 274 IPR000408 -
Pral3360g00018 868 SUPERFAMILY RCC1/BLIP-II 61 443 IPR009091 -
Pral3360g00018 868 Gene3D - 281 448 IPR009091 -
Pral3360g00018 868 SMART fyve_4 441 510 IPR000306 GO:0046872
Pral3360g00018 868 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 287 338 IPR000408 -
Pral3360g00018 868 SUPERFAMILY FYVE/PHD zinc finger 448 518 IPR011011 -
Pral3360g00018 868 Pfam Regulator of chromosome condensation (RCC1) repeat 287 335 IPR000408 -
Pral3360g00018 868 Pfam Regulator of chromosome condensation (RCC1) repeat 393 439 IPR000408 -
Pral3360g00018 868 Pfam Regulator of chromosome condensation (RCC1) repeat 226 274 IPR000408 -
Pral3360g00018 868 Pfam Transcription factor regulating root and shoot growth via Pin3 799 853 IPR013591 -
Pral3360g00018 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 516 IPR013083 -
Pral3360g00018 868 PRINTS Chromosome condensation regulator RCC1 signature 212 228 IPR000408 -
Pral3360g00018 868 PRINTS Chromosome condensation regulator RCC1 signature 61 77 IPR000408 -
Pral3360g00018 868 PRINTS Chromosome condensation regulator RCC1 signature 228 242 IPR000408 -
Pral3360g00018 868 PRINTS Chromosome condensation regulator RCC1 signature 328 346 IPR000408 -
Pral3360g00018 868 PRINTS Chromosome condensation regulator RCC1 signature 171 187 IPR000408 -
Pral3360g00018 868 PRINTS Chromosome condensation regulator RCC1 signature 386 407 IPR000408 -
Pral3360g00018 868 PRINTS Chromosome condensation regulator RCC1 signature 121 137 IPR000408 -
Pral3360g00018 868 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 226 277 IPR000408 -
Pral3360g00018 868 Pfam Regulator of chromosome condensation (RCC1) repeat 154 181 - -
Pral3360g00018 868 Pfam FYVE zinc finger 449 507 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3360g00018 Pral-Chr3360 122090 126754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3360g00018 752 856 Major Intrinsic Protein MIP AT1G31880 37.143 9.49e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3360g00018 - - adu:107481014 1166.76