Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3360g00017 ATGGTCACTTGTATGTCTGAATCTGCAATTGTATTTATAAAGAAAGGTGCATACTTACTGAAGTGTGGACGCAGAGGGAAGCCGAAGCTCTGCCCATTCAGACTTTCTCAGGATGAGAAAAATTTGATTTGGTACTCCGGACAGCAGGAAAAACACTTGCGGTTGAGTTCAGTCACTAGAATTATTCAAGGGCAGGGAAATATAAAGTCCCAAAAGCTAAATCAAAACGGGAAGGAGTGCCATTCATTTTCTCTAATTTATGCTAATGGTGAACGCTCACTTGATCTGATATGCAAGGACAAAGCACAGGCTACTTCTTGGTTTGTGGGCTTGAAAGCCGTAATTTCTCAGTCTCAACACCAAAAACCTTTTAGTAGTTTAAGAAGCTGCAAAGGTATACAGAGTTGTGTCAGTAGTCCAGCTGGAATCTTACGAAGAAAGAAAAACCTTGGCCTTCTGGAGGATGCTGCTGAATTCACAAAGGTACACAGCGTTTGTGCAAGTCCTACTTTGTCACTTTCAGAGAGGTGCTTTTCTGATGGCTTATCTTATAATTGTGATAGCTTCTATTCATCAGAGTCTTTCCCATCCGATACTCAAAGGGTAGGTGATAATTCAGTTCCAAATTCTCCATGCATCGATCCAGATATTCTTAGCAAGAGTAGGTCAACATATGTTGATACAGAATATCAGAAGGATTTGCCCTATAGGTATCTTGTGCCTGCCACCTCTCCACGTGTAGCAAATAACAATATATTGAAAGATGTCATGATCTGGGGTGGGGGGATTGTCAGAATTGCAGGGAGTGGGAATGACCAGCTTGTCGACCAGCAGGGAGCTCATATGCTGTTGCCAAAGTTACTAGAATCCACTATGATGTTAGATGTAGAAAACATTGCATTAGGAGAAAAACACGCTGTACTTGTTACAAAGCAAGGAGAAGTGTTAAGCTGGGGCGAGGGGAAAGGAGGAAGGCTGGGGCTCAAAGTTGATATAGATATAACCTCTCCCAAAATTGTTGATTCTCTTAATGGGGTGCATGTAAAGGATGTTGCCTGTGGTGAGTACCATGCGTGTGCTTTGACAGATTCTGGCGAAGTATATGCATGGGGGAATAGTGGTTGTGTTGCAGATCAGTTTGGTGAAGGGAGATTCAAAACTCAATGGATACCACACAAACTCTCTGGTCCTTTAGATGGTATTATTATAGCACATGTCACTTGTGGGGAATGGCATACAGCAATTGTCTCATCTTGCGGACGGCTATTTACATATGGGGATGGTACATTTGGAGTTCTTGGGCATGGGAATTCTCTGAGCATTCCTCAACCAAAAGAAGTTGAATCTCTTAAGGGTCTATGGGTGAGGTCTGTTGCTTGTGGATCGTGGCACACAGCAGCAATTGTTGAAGTCATGGTTGACCGCTTTAGGTACAATACTGGTAAGCTGTTCACTTGGGGTGATGGAGAGAAAGGGATGCTTGGCCATGCTGATAACGGGAGGAAGCTCTTGCCAACCTGTGTTTCACAACTGCTGGATTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTAATATGGGTAAAGTTTTCACAATGGGAAGTGCAGTGCATGGACAGCTAGGAAGTCCACGTGCCAAGGATAAATCAGTGACAATTGTTGAAGGACTTCTTAAACAGGAGTTTGTGAAAGAGATATCATCAGGTTCATATCACGTTGCTGTCTTGACATCTTCCAGGAGTGTCTATACATGGGGAAAGGGTGCAAATGGACAGCTAGGGTTAGGTGACACCGAGGACAGGTACTCACCATCTTTTGTTGTGGCTCTAAGAGACTGGCAGGTAGAGAGTATTGCTTGTGGACCAAGCAGCACAGCTGCTATCTGTTTACACAAACCAATTTCTATTAGTGACCAGTCAGCTTGTAGTGGTTGTAAATTGCCCTTTGGATTTACAAGGAAGAAGCATAATTGCTATAATTGTGGCCTCCTATTTTGTCATCCATGCAGTAGTAAAAAGGTTACTGATGCAGCTCTGGCACCAAATAAGAACAAGGCTTTTCGGGTTTGTGACCAATGCTTCAATAAGCAGCTTGGAAGTACACCTTCAGTTGCGGCTTCCAGGTCAAGAAATTACAATTCTCAAAAGGTGCTGAAGAATCAGAACAAGTTTACTGATTTTACAGAAGATAGAGGAGAAACAGCAGTGACACAGGGTCCACTGTTGTCTCTTGGTCAATCATGCTACAAAAGAAGCATGCCAGGTGGAAGAAAAGAGTGGAAAAACCAGCAAGAAAGCCAGCAGAATTTAGAAAATATTTCTTCTCTATCTGGTGGAATGCCGAAATGGGGGCAAGTTACATGCCCTGCCCTGTTTAAAAATTGTACAGAAAATTCTGTTTCATCATTTAGAAATAAATTAGGTTCTCTTACTTCAGTGCATTTAGAGTATACTTTATCCAACAATTTGTATGGAGAGAAAGATGCCACAAAGTCTGATAATACATTGATAGAAGAAGTTCAGAGGCTAAGAGCTGAGGCTAGAATCCTTGAAGAGCAATGTGAGATAGGAAACCGTAAGTTACAAGAATGTCATAAAAAGATTGAGGAGACTTGGCTATTGGCAAAGGAGGAGGCTGCAAAGAGCAAGGCAGCGAAAGAGGTCATAAAAGCCTTGGTATTAAGGCTTTTGCAGTTGCAAACAGTATCAGATAAAACCATAGCCGAACAAGACGGAAAGCTGGGGATACAGGAATGTCTGTCAAATTTAACACGCATTCGTACGGATATCAATTCTACAAATGATGGCAATGTGGACAGTCTATCAAATTCCCCTATCGTGTTCTCTGACTCGTTAAAATCCAAACTTGCGAGAAGTTCAATCCTTAAAGGTGATAGATCAAAGGAGGATTCTCAGTTAACTAAAGCAGAATCTCATGAAGATGGCTCTGAGGGCTCGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTCTACATCACTTTAACTGCCTTGCCATGTGGGCAGAAGGGCCTTAAGAGAGTTAGATTCAGCCGGAAACAATTTTCTGAGAAGGAAGCCGAGAGATGGTGGGAGAAGAATCAAGCCGCAGTGTATCAGAAGTATGGGATTCAAGGATGTATAAAGACAAGCCAAAACTGGGAGAAGGGCTAA 3189 0.424 MVTCMSESAIVFIKKGAYLLKCGRRGKPKLCPFRLSQDEKNLIWYSGQQEKHLRLSSVTRIIQGQGNIKSQKLNQNGKECHSFSLIYANGERSLDLICKDKAQATSWFVGLKAVISQSQHQKPFSSLRSCKGIQSCVSSPAGILRRKKNLGLLEDAAEFTKVHSVCASPTLSLSERCFSDGLSYNCDSFYSSESFPSDTQRVGDNSVPNSPCIDPDILSKSRSTYVDTEYQKDLPYRYLVPATSPRVANNNILKDVMIWGGGIVRIAGSGNDQLVDQQGAHMLLPKLLESTMMLDVENIALGEKHAVLVTKQGEVLSWGEGKGGRLGLKVDIDITSPKIVDSLNGVHVKDVACGEYHACALTDSGEVYAWGNSGCVADQFGEGRFKTQWIPHKLSGPLDGIIIAHVTCGEWHTAIVSSCGRLFTYGDGTFGVLGHGNSLSIPQPKEVESLKGLWVRSVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGEKGMLGHADNGRKLLPTCVSQLLDYDFVQVSCGRMLTVALTNMGKVFTMGSAVHGQLGSPRAKDKSVTIVEGLLKQEFVKEISSGSYHVAVLTSSRSVYTWGKGANGQLGLGDTEDRYSPSFVVALRDWQVESIACGPSSTAAICLHKPISISDQSACSGCKLPFGFTRKKHNCYNCGLLFCHPCSSKKVTDAALAPNKNKAFRVCDQCFNKQLGSTPSVAASRSRNYNSQKVLKNQNKFTDFTEDRGETAVTQGPLLSLGQSCYKRSMPGGRKEWKNQQESQQNLENISSLSGGMPKWGQVTCPALFKNCTENSVSSFRNKLGSLTSVHLEYTLSNNLYGEKDATKSDNTLIEEVQRLRAEARILEEQCEIGNRKLQECHKKIEETWLLAKEEAAKSKAAKEVIKALVLRLLQLQTVSDKTIAEQDGKLGIQECLSNLTRIRTDINSTNDGNVDSLSNSPIVFSDSLKSKLARSSILKGDRSKEDSQLTKAESHEDGSEGSKVEWVEQYEPGVYITLTALPCGQKGLKRVRFSRKQFSEKEAERWWEKNQAAVYQKYGIQGCIKTSQNWEKG 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3360g00017 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 313 364 IPR000408 -
Pral3360g00017 1062 Pfam FYVE zinc finger 643 701 IPR000306 GO:0046872
Pral3360g00017 1062 SUPERFAMILY PH domain-like 7 115 - -
Pral3360g00017 1062 CDD PH_PLC_plant-like 7 116 - -
Pral3360g00017 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 710 IPR013083 -
Pral3360g00017 1062 SMART fyve_4 635 704 IPR000306 GO:0046872
Pral3360g00017 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 481 529 IPR000408 -
Pral3360g00017 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 587 633 IPR000408 -
Pral3360g00017 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 420 468 IPR000408 -
Pral3360g00017 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 481 532 IPR000408 -
Pral3360g00017 1062 Gene3D - 475 643 IPR009091 -
Pral3360g00017 1062 SUPERFAMILY FYVE/PHD zinc finger 642 711 IPR011011 -
Pral3360g00017 1062 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 641 703 IPR017455 -
Pral3360g00017 1062 Pfam Regulator of chromosome condensation (RCC1) repeat 348 375 - -
Pral3360g00017 1062 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 50 902 - -
Pral3360g00017 1062 Gene3D - 3 123 IPR011993 -
Pral3360g00017 1062 Gene3D - 377 474 IPR009091 -
Pral3360g00017 1062 Gene3D - 247 376 IPR009091 -
Pral3360g00017 1062 Pfam Transcription factor regulating root and shoot growth via Pin3 993 1047 IPR013591 -
Pral3360g00017 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 533 584 IPR000408 -
Pral3360g00017 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 365 419 IPR000408 -
Pral3360g00017 1062 PRINTS Chromosome condensation regulator RCC1 signature 365 381 IPR000408 -
Pral3360g00017 1062 PRINTS Chromosome condensation regulator RCC1 signature 580 601 IPR000408 -
Pral3360g00017 1062 PRINTS Chromosome condensation regulator RCC1 signature 255 271 IPR000408 -
Pral3360g00017 1062 PRINTS Chromosome condensation regulator RCC1 signature 422 436 IPR000408 -
Pral3360g00017 1062 PRINTS Chromosome condensation regulator RCC1 signature 522 540 IPR000408 -
Pral3360g00017 1062 PRINTS Chromosome condensation regulator RCC1 signature 406 422 IPR000408 -
Pral3360g00017 1062 PRINTS Chromosome condensation regulator RCC1 signature 315 331 IPR000408 -
Pral3360g00017 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 585 636 IPR000408 -
Pral3360g00017 1062 Coils Coil 838 865 - -
Pral3360g00017 1062 ProSiteProfiles BRX domain profile. 993 1048 IPR013591 -
Pral3360g00017 1062 SUPERFAMILY RCC1/BLIP-II 255 637 IPR009091 -
Pral3360g00017 1062 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 420 471 IPR000408 -
Pral3360g00017 1062 MobiDBLite consensus disorder prediction 968 992 - -
Pral3360g00017 1062 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 458 468 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3360g00017 Pral-Chr3360 119658 126754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3360g00017 946 1050 Major Intrinsic Protein MIP AT1G31880 37.143 1.01e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3360g00017 - - adu:107481014 1502.26