Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3360g00015 ATGACAATGGGAGATGAGTCTTTGACAATATCAACAACAGCAGTCCCCTTTGACAGAGCAGTTGAACAGGCAATTGTATTTATAAAGAAAGGTGCATACTTACTGAAGTGTGGACGCAGAGGGAAGCCGAAGCTCTGCCCATTCAGACTTTCTCAGGATGAGAAAAATTTGATTTGGTACTCCGGACAGCAGGAAAAACACTTGCGGTTGAGTTCAGTCACTAGAATTATTCAAGGGCAGGGAAATATAAAGTCCCAAAAGCTAAATCAAAACGGGAAGGAGTGCCATTCATTTTCTCTAATTTATGCTAATGGTGAACGCTCACTTGATCTGATATGCAAGGACAAAGCACAGGCTACTTCTTGGTTTGTGGGCTTGAAAGCCGTAATTTCTCAGTCTCAACACCAAAAACCTTTTAGTAGTTTAAGAAGCTGCAAAGGTATACAGAGTTGTGTCAGTAGTCCAGCTGGAATCTTACGAAGAAAGAAAAACCTTGGCCTTCTGGAGGATGCTGCTGAATTCACAAAGGTACACAGCGTTTGTGCAAGTCCTACTTTGTCACTTTCAGAGAGGTGCTTTTCTGATGGCTTATCTTATAATTGTGATAGCTTCTATTCATCAGAGTCTTTCCCATCCGATACTCAAAGGGTAGGTGATAATTCAGTTCCAAATTCTCCATGCATCGATCCAGATATTCTTAGCAAGAGTAGGTCAACATATGTTGATACAGAATATCAGAAGGATTTGCCCTATAGGTATCTTGTGCCTGCCACCTCTCCACGTGTAGCAAATAACAATATATTGAAAGATGTCATGATCTGGGGTGGGGGGATTGTCAGAATTGCAGGGAGTGGGAATGACCAGCTTGTCGACCAGCAGGGAGCTCATATGCTGTTGCCAAAGTTACTAGAATCCACTATGATGTTAGATGTAGAAAACATTGCATTAGGAGAAAAACACGCTGTACTTGTTACAAAGCAAGGAGAAGTGTTAAGCTGGGGCGAGGGGAAAGGAGGAAGGCTGGGGCTCAAAGTTGATATAGATATAACCTCTCCCAAAATTGTTGATTCTCTTAATGGGGTGCATGTAAAGGATGTTGCCTGTGGTGAGTACCATGCGTGTGCTTTGACAGATTCTGGCGAAGTATATGCATGGGGGAATAGTGGTTGTGTTGCAGATCAGTTTGGTGAAGGGAGATTCAAAACTCAATGGATACCACACAAACTCTCTGGTCCTTTAGATGGTATTATTATAGCACATGTCACTTGTGGGGAATGGCATACAGCAATTGTCTCATCTTGCGGACGGCTATTTACATATGGGGATGGTACATTTGGAGTTCTTGGGCATGGGAATTCTCTGAGCATTCCTCAACCAAAAGAAGTTGAATCTCTTAAGGGTCTATGGGTGAGGTCTGTTGCTTGTGGATCGTGGCACACAGCAGCAATTGTTGAAGTCATGGTTGACCGCTTTAGGTACAATACTGGTAAGCTGTTCACTTGGGGTGATGGAGAGAAAGGGATGCTTGGCCATGCTGATAACGGGAGGAAGCTCTTGCCAACCTGTGTTTCACAACTGCTGGATTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTAATATGGGTAAAGTTTTCACAATGGGAAGTGCAGTGCATGGACAGCTAGGAAGTCCACGTGCCAAGGATAAATCAGTGACAATTGTTGAAGGACTTCTTAAACAGGAGTTTGTGAAAGAGATATCATCAGGTTCATATCACGTTGCTGTCTTGACATCTTCCAGGAGTGTCTATACATGGGGAAAGGGTGCAAATGGACAGCTAGGGTTAGGTGACACCGAGGACAGGTACTCACCATCTTTTGTTGTGGCTCTAAGAGACTGGCAGGTAGAGAGTATTGCTTGTGGACCAAGCAGCACAGCTGCTATCTGTTTACACAAACCAATTTCTATTAGTGACCAGTCAGCTTGTAGTGGTTGTAAATTGCCCTTTGGATTTACAAGGAAGAAGCATAATTGCTATAATTGTGGCCTCCTATTTTGTCATCCATGCAGTAGTAAAAAGGTTACTGATGCAGCTCTGGCACCAAATAAGAACAAGGCTTTTCGGGTTTGTGACCAATGCTTCAATAAGCAGCTTGGAAGTACACCTTCAGTTGCGGCTTCCAGGTCAAGAAATTACAATTCTCAAAAGGTGCTGAAGAATCAGAACAAGTTTACTGATTTTACAGAAGATAGAGGAGAAACAGCAGTGACACAGGGTCCACTGTTGTCTCTTGGTCAATCATGCTACAAAAGAAGCATGCCAGGTGGAAGAAAAGAGTGGAAAAACCAGCAAGAAAGCCAGCAGAATTTAGAAAATATTTCTTCTCTATCTGGTGGAATGCCGAAATGGGGGCAAGTTACATGCCCTGCCCTGTTTAAAAATTGTACAGAAAATTCTGTTTCATCATTTAGAAATAAATTAGGTTCTCTTACTTCAGTGCATTTAGAGTATACTTTATCCAACAATTTGTATGGAGAGAAAGATGCCACAAAGTCTGATAATACATTGATAGAAGAAGTTCAGAGGCTAAGAGCTGAGGCTAGAATCCTTGAAGAGCAATGTGAGATAGGAAACCGTAAGTTACAAGAATGTCATAAAAAGATTGAGGAGACTTGGCTATTGGCAAAGGAGGAGGCTGCAAAGAGCAAGGCAGCGAAAGAGGTCATAAAAGCCTTGGTATTAAGGTTGCAAACAGTATCAGATAAAACCATAGCCGAACAAGACGGAAAGCTGGGGATACAGGAATGTCTGTCAAATTTAACACGCATTCGTACGGATATCAATTCTACAAATGATGGCAATGTGGACAGTCTATCAAATTCCCCTATCGTGTTCTCTGACTCGTTAAAATCCAAACTTGCGAGAAGTTCAATCCTTAAAGGTGATAGATCAAAGGAGGATTCTCAGTTAACTAAAGCAGAATCTCATGAAGATGGCTCTGAGGGCTCGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTCTACATCACTTTAACTGCCTTGCCATGTGGGCAGAAGGGCCTTAAGAGAGTTAGATTCAGCCGGAAACAATTTTCTGAGAAGGAAGCCGAGAGATGGTGGGAGAAGAATCAAGCCGCAGTGTATCAGAAGTATGGGATTCAAGGATGTATAAAGACAAGCCAAAACTGGGAGAAGGGCTAA 3225 0.4245 MTMGDESLTISTTAVPFDRAVEQAIVFIKKGAYLLKCGRRGKPKLCPFRLSQDEKNLIWYSGQQEKHLRLSSVTRIIQGQGNIKSQKLNQNGKECHSFSLIYANGERSLDLICKDKAQATSWFVGLKAVISQSQHQKPFSSLRSCKGIQSCVSSPAGILRRKKNLGLLEDAAEFTKVHSVCASPTLSLSERCFSDGLSYNCDSFYSSESFPSDTQRVGDNSVPNSPCIDPDILSKSRSTYVDTEYQKDLPYRYLVPATSPRVANNNILKDVMIWGGGIVRIAGSGNDQLVDQQGAHMLLPKLLESTMMLDVENIALGEKHAVLVTKQGEVLSWGEGKGGRLGLKVDIDITSPKIVDSLNGVHVKDVACGEYHACALTDSGEVYAWGNSGCVADQFGEGRFKTQWIPHKLSGPLDGIIIAHVTCGEWHTAIVSSCGRLFTYGDGTFGVLGHGNSLSIPQPKEVESLKGLWVRSVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGEKGMLGHADNGRKLLPTCVSQLLDYDFVQVSCGRMLTVALTNMGKVFTMGSAVHGQLGSPRAKDKSVTIVEGLLKQEFVKEISSGSYHVAVLTSSRSVYTWGKGANGQLGLGDTEDRYSPSFVVALRDWQVESIACGPSSTAAICLHKPISISDQSACSGCKLPFGFTRKKHNCYNCGLLFCHPCSSKKVTDAALAPNKNKAFRVCDQCFNKQLGSTPSVAASRSRNYNSQKVLKNQNKFTDFTEDRGETAVTQGPLLSLGQSCYKRSMPGGRKEWKNQQESQQNLENISSLSGGMPKWGQVTCPALFKNCTENSVSSFRNKLGSLTSVHLEYTLSNNLYGEKDATKSDNTLIEEVQRLRAEARILEEQCEIGNRKLQECHKKIEETWLLAKEEAAKSKAAKEVIKALVLRLQTVSDKTIAEQDGKLGIQECLSNLTRIRTDINSTNDGNVDSLSNSPIVFSDSLKSKLARSSILKGDRSKEDSQLTKAESHEDGSEGSKVEWVEQYEPGVYITLTALPCGQKGLKRVRFSRKQFSEKEAERWWEKNQAAVYQKYGIQGCIKTSQNWEKG 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3360g00015 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Pral3360g00015 1074 CDD PH_PLC_plant-like 19 131 - -
Pral3360g00015 1074 Gene3D - 392 489 IPR009091 -
Pral3360g00015 1074 Gene3D - 262 391 IPR009091 -
Pral3360g00015 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 548 599 IPR000408 -
Pral3360g00015 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 363 390 - -
Pral3360g00015 1074 SUPERFAMILY RCC1/BLIP-II 270 652 IPR009091 -
Pral3360g00015 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 434 IPR000408 -
Pral3360g00015 1074 SMART fyve_4 650 719 IPR000306 GO:0046872
Pral3360g00015 1074 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 65 917 - -
Pral3360g00015 1074 SUPERFAMILY FYVE/PHD zinc finger 657 726 IPR011011 -
Pral3360g00015 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 725 IPR013083 -
Pral3360g00015 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 600 651 IPR000408 -
Pral3360g00015 1074 Pfam FYVE zinc finger 658 716 IPR000306 GO:0046872
Pral3360g00015 1074 MobiDBLite consensus disorder prediction 980 1004 - -
Pral3360g00015 1074 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Pral3360g00015 1074 PRINTS Chromosome condensation regulator RCC1 signature 421 437 IPR000408 -
Pral3360g00015 1074 PRINTS Chromosome condensation regulator RCC1 signature 595 616 IPR000408 -
Pral3360g00015 1074 PRINTS Chromosome condensation regulator RCC1 signature 437 451 IPR000408 -
Pral3360g00015 1074 PRINTS Chromosome condensation regulator RCC1 signature 537 555 IPR000408 -
Pral3360g00015 1074 PRINTS Chromosome condensation regulator RCC1 signature 270 286 IPR000408 -
Pral3360g00015 1074 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Pral3360g00015 1074 Coils Coil 853 880 - -
Pral3360g00015 1074 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1059 IPR013591 -
Pral3360g00015 1074 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 656 718 IPR017455 -
Pral3360g00015 1074 Gene3D - 20 138 IPR011993 -
Pral3360g00015 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 379 IPR000408 -
Pral3360g00015 1074 SUPERFAMILY PH domain-like 20 130 - -
Pral3360g00015 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 496 547 IPR000408 -
Pral3360g00015 1074 ProSiteProfiles BRX domain profile. 1005 1060 IPR013591 -
Pral3360g00015 1074 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 473 483 IPR000408 -
Pral3360g00015 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 602 648 IPR000408 -
Pral3360g00015 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 435 483 IPR000408 -
Pral3360g00015 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 496 544 IPR000408 -
Pral3360g00015 1074 Gene3D - 490 658 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3360g00015 Pral-Chr3360 118804 126754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3360g00015 958 1062 Major Intrinsic Protein MIP AT1G31880 37.143 9.83e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3360g00015 - - adu:107481014 1527.69