Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3360g00014 ATGACAATGGGAGATGAGTCTTTGACAATATCAACAACAGCAGTCCCCTTTGACAGAGCAGTTGAACAGGCAATTGTATTTATAAAGAAAGGTGCATACTTACTGAAGTGTGGACGCAGAGGGAAGCCGAAGCTCTGCCCATTCAGACTTTCTCAGGATGAGAAAAATTTGATTTGGTACTCCGGACAGCAGGAAAAACACTTGCGGTTGAGTTCAGTCACTAGAATTATTCAAGGGCAGGGAAATATAAAGTCCCAAAAGCTAAATCAAAACGGGAAGGAGTGCCATTCATTTTCTCTAATTTATGCTAATGGTGAACGCTCACTTGATCTGATATGCAAGGACAAAGCACAGGCTACTTCTTGGTTTGTGGGCTTGAAAGCCGTAATTTCTCAGTCTCAACACCAAAAACCTTTTAGTAGTTTAAGAAGCTGCAAAGGTATACAGAGTTGTGTCAGTAGTCCAGCTGGAATCTTACGAAGAAAGAAAAACCTTGGCCTTCTGGAGGATGCTGCTGAATTCACAAAGGTACACAGCGTTTGTGCAAGTCCTACTTTGTCACTTTCAGAGAGGTGCTTTTCTGATGGCTTATCTTATAATTGTGATAGCTTCTATTCATCAGAGTCTTTCCCATCCGATACTCAAAGGGTAGGTGATAATTCAGTTCCAAATTCTCCATGCATCGATCCAGATATTCTTAGCAAGAGTAGGTCAACATATGTTGATACAGAATATCAGAAGGATTTGCCCTATAGGTATCTTGTGCCTGCCACCTCTCCACGTGTAGCAAATAACAATATATTGAAAGATGTCATGATCTGGGGTGGGGGGATTGTCAGAATTGCAGGGAGTGGGAATGACCAGCTTGTCGACCAGCAGGGAGCTCATATGCTGTTGCCAAAGTTACTAGAATCCACTATGATGTTAGATGTAGAAAACATTGCATTAGGAGAAAAACACGCTGTACTTGTTACAAAGCAAGGAGAAGTGTTAAGCTGGGGCGAGGGGAAAGGAGGAAGGCTGGGGCTCAAAGTTGATATAGATATAACCTCTCCCAAAATTGTTGATTCTCTTAATGGGGTGCATGTAAAGGATGTTGCCTGTGGTGAGTACCATGCGTGTGCTTTGACAGATTCTGGCGAAGTATATGCATGGGGGAATAGTGGTTGTGTTGCAGATCAGTTTGGTGAAGGGAGATTCAAAACTCAATGGATACCACACAAACTCTCTGGTCCTTTAGATGGTATTATTATAGCACATGTCACTTGTGGGGAATGGCATACAGCAATTGTCTCATCTTGCGGACGGCTATTTACATATGGGGATGGTACATTTGGAGTTCTTGGGCATGGGAATTCTCTGAGCATTCCTCAACCAAAAGAAGTTGAATCTCTTAAGGGTCTATGGGTGAGGTCTGTTGCTTGTGGATCGTGGCACACAGCAGCAATTGTTGAAGTCATGGTTGACCGCTTTAGGTACAATACTGGTAAGCTGTTCACTTGGGGTGATGGAGAGAAAGGGATGCTTGGCCATGCTGATAACGGGAGGAAGCTCTTGCCAACCTGTGTTTCACAACTGCTGGATTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTAATATGGGTAAAGTTTTCACAATGGGAAGTGCAGTGCATGGACAGCTAGGAAGTCCACGTGCCAAGGATAAATCAGTGACAATTGTTGAAGGACTTCTTAAACAGGAGTTTGTGAAAGAGATATCATCAGGTTCATATCACGTTGCTGTCTTGACATCTTCCAGGAGTGTCTATACATGGGGAAAGGGTGCAAATGGACAGCTAGGGTTAGGTGACACCGAGGACAGGTACTCACCATCTTTTGTTGTGGCTCTAAGAGACTGGCAGGTAGAGAGTATTGCTTGTGGACCAAGCAGCACAGCTGCTATCTGTTTACACAAACCAATTTCTATTAGTGACCAGTCAGCTTGTAGTGGTTGTAAATTGCCCTTTGGATTTACAAGGAAGAAGCATAATTGCTATAATTGTGGCCTCCTATTTTGTCATCCATGCAGTAGTAAAAAGGTTACTGATGCAGCTCTGGCACCAAATAAGAACAAGGCTTTTCGGGTTTGTGACCAATGCTTCAATAAGCAGCTTGGAAGTACACCTTCAGTTGCGGCTTCCAGGTCAAGAAATTACAATTCTCAAAAGGTGCTGAAGAATCAGAACAAGTTTACTGATTTTACAGAAGATAGAGGAGAAACAGCAGTGACACAGGGTCCACTGTTGTCTCTTGGTCAATCATGCTACAAAAGAAGCATGCCAGGTGGAAGAAAAGAGTGGAAAAACCAGCAAGAAAGCCAGCAGAATTTAGAAAATATTTCTTCTCTATCTGGTGGAATGCCGAAATGGGGGCAAGTTACATGCCCTGCCCTGTTTAAAAATTGTACAGAAAATTCTGTTTCATCATTTAGAAATAAATTAGGTTCTCTTACTTCAGTGCATTTAGAGTATACTTTATCCAACAATTTGTATGGAGAGAAAGATGCCACAAAGTCTGATAATACATTGATAGAAGAAGTTCAGAGGCTAAGAGCTGAGGCTAGAATCCTTGAAGAGCAATGTGAGATAGGAAACCGTAAGTTACAAGAATGTCATAAAAAGATTGAGGAGACTTGGCTATTGGCAAAGGAGGAGGCTGCAAAGAGCAAGGCAGCGAAAGAGGTCATAAAAGCCTTGGTATTAAGGCTTTTGCAGTTGCAAACAGTATCAGATAAAACCATAGCCGAACAAGACGGAAAGCTGGGGATACAGGAATGTCTGTCAAATTTAACACGCATTCGTACGGATATCAATTCTACAAATGATGGCAATGTGGACAGTCTATCAAATTCCCCTATCGTGTTCTCTGACTCGTTAAAATCCAAACTTGCGAGAAGTTCAATCCTTAAAGGTGATAGATCAAAGGAGGATTCTCAGTTAACTAAAGCAGAATCTCATGAAGATGGCTCTGAGGGCTCGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTCTACATCACTTTAACTGCCTTGCCATGTGGGCAGAAGGGCCTTAAGAGAGTTAGATTCAGCCGGAAACAATTTTCTGAGAAGGAAGCCGAGAGATGGTGGGAGAAGAATCAAGCCGCAGTGTATCAGAAGTATGGGATTCAAGGATGTATAAAGACAAGCCAAAACTGGGAGAAGGGCTAA 3234 0.4246 MTMGDESLTISTTAVPFDRAVEQAIVFIKKGAYLLKCGRRGKPKLCPFRLSQDEKNLIWYSGQQEKHLRLSSVTRIIQGQGNIKSQKLNQNGKECHSFSLIYANGERSLDLICKDKAQATSWFVGLKAVISQSQHQKPFSSLRSCKGIQSCVSSPAGILRRKKNLGLLEDAAEFTKVHSVCASPTLSLSERCFSDGLSYNCDSFYSSESFPSDTQRVGDNSVPNSPCIDPDILSKSRSTYVDTEYQKDLPYRYLVPATSPRVANNNILKDVMIWGGGIVRIAGSGNDQLVDQQGAHMLLPKLLESTMMLDVENIALGEKHAVLVTKQGEVLSWGEGKGGRLGLKVDIDITSPKIVDSLNGVHVKDVACGEYHACALTDSGEVYAWGNSGCVADQFGEGRFKTQWIPHKLSGPLDGIIIAHVTCGEWHTAIVSSCGRLFTYGDGTFGVLGHGNSLSIPQPKEVESLKGLWVRSVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGEKGMLGHADNGRKLLPTCVSQLLDYDFVQVSCGRMLTVALTNMGKVFTMGSAVHGQLGSPRAKDKSVTIVEGLLKQEFVKEISSGSYHVAVLTSSRSVYTWGKGANGQLGLGDTEDRYSPSFVVALRDWQVESIACGPSSTAAICLHKPISISDQSACSGCKLPFGFTRKKHNCYNCGLLFCHPCSSKKVTDAALAPNKNKAFRVCDQCFNKQLGSTPSVAASRSRNYNSQKVLKNQNKFTDFTEDRGETAVTQGPLLSLGQSCYKRSMPGGRKEWKNQQESQQNLENISSLSGGMPKWGQVTCPALFKNCTENSVSSFRNKLGSLTSVHLEYTLSNNLYGEKDATKSDNTLIEEVQRLRAEARILEEQCEIGNRKLQECHKKIEETWLLAKEEAAKSKAAKEVIKALVLRLLQLQTVSDKTIAEQDGKLGIQECLSNLTRIRTDINSTNDGNVDSLSNSPIVFSDSLKSKLARSSILKGDRSKEDSQLTKAESHEDGSEGSKVEWVEQYEPGVYITLTALPCGQKGLKRVRFSRKQFSEKEAERWWEKNQAAVYQKYGIQGCIKTSQNWEKG 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3360g00014 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Pral3360g00014 1077 CDD PH_PLC_plant-like 19 131 - -
Pral3360g00014 1077 MobiDBLite consensus disorder prediction 983 1007 - -
Pral3360g00014 1077 SUPERFAMILY PH domain-like 20 130 - -
Pral3360g00014 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 548 599 IPR000408 -
Pral3360g00014 1077 SUPERFAMILY RCC1/BLIP-II 270 652 IPR009091 -
Pral3360g00014 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 434 IPR000408 -
Pral3360g00014 1077 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 65 917 - -
Pral3360g00014 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 725 IPR013083 -
Pral3360g00014 1077 SMART fyve_4 650 719 IPR000306 GO:0046872
Pral3360g00014 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 602 648 IPR000408 -
Pral3360g00014 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 435 483 IPR000408 -
Pral3360g00014 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 496 544 IPR000408 -
Pral3360g00014 1077 SUPERFAMILY FYVE/PHD zinc finger 657 726 IPR011011 -
Pral3360g00014 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 600 651 IPR000408 -
Pral3360g00014 1077 Pfam FYVE zinc finger 658 716 IPR000306 GO:0046872
Pral3360g00014 1077 ProSiteProfiles BRX domain profile. 1008 1063 IPR013591 -
Pral3360g00014 1077 Pfam Transcription factor regulating root and shoot growth via Pin3 1008 1062 IPR013591 -
Pral3360g00014 1077 Coils Coil 853 880 - -
Pral3360g00014 1077 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 656 718 IPR017455 -
Pral3360g00014 1077 Gene3D - 20 138 IPR011993 -
Pral3360g00014 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 379 IPR000408 -
Pral3360g00014 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 496 547 IPR000408 -
Pral3360g00014 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 473 483 IPR000408 -
Pral3360g00014 1077 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Pral3360g00014 1077 PRINTS Chromosome condensation regulator RCC1 signature 595 616 IPR000408 -
Pral3360g00014 1077 PRINTS Chromosome condensation regulator RCC1 signature 537 555 IPR000408 -
Pral3360g00014 1077 PRINTS Chromosome condensation regulator RCC1 signature 437 451 IPR000408 -
Pral3360g00014 1077 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Pral3360g00014 1077 PRINTS Chromosome condensation regulator RCC1 signature 421 437 IPR000408 -
Pral3360g00014 1077 PRINTS Chromosome condensation regulator RCC1 signature 270 286 IPR000408 -
Pral3360g00014 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 363 390 - -
Pral3360g00014 1077 Gene3D - 392 489 IPR009091 -
Pral3360g00014 1077 Gene3D - 262 391 IPR009091 -
Pral3360g00014 1077 Gene3D - 490 658 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3360g00014 Pral-Chr3360 118804 126754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3360g00014 961 1065 Major Intrinsic Protein MIP AT1G31880 37.143 9.35e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3360g00014 - - adu:107481014 1522.29