Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3360g00007 ATGATGGGGATGTCCATGGAAATCTCATTTGCTCTGTTTGCCACACTAACAATTCTACTCACTCTTTCTTCAACAGTCACTTCCCATTACTCCTCCTTCTCTTCCACCACTTCTCCTGCTCAGCATTCTTCATCTTCCTCGTCGCCCTCCGAATGGCGATCTGCGCACGCTACTTACTACGCCGCCGCAGATCCCAGGGACGCGGTAGGCGGCGCGTGCGGCTATGGTGACCTTGTCAAAGCTGGTTACGGCATGGGCACTGTGGGTCTCAGTGAGTCTCTCTTCGAGCGGGGTCAGATCTGTGGTGCCTGCTTCGAGCTCCGCTGCGTCGATGACCTTCGTTGGTGTATCCCCGGAACCTCCATTATCGTCACTGCTACGAATTTCTGTGCGCCCAACTATGGCTTCACAGCTGAGGGAGGTGGCCGTTGTAACCCTCCCAACAAGCATTTCGTGCTCCCGATTGAAGCTTTTGAGAAGATAGCTATTTGGAAAGCTGGGAACATGCCGGTTCAGTATCGCAGGATAAAGTGCCGAAAGCAAGGAGGAATGCGCTTTACAGTCACAGGTTCTGGGATTTATATCTCAGTGCTGATCAGCAATGTAGCCGGCGCTGGAGACATTGTGGCTGTGAAGGTGAAGGGCTCAAGAACAGGTTGGCTTCCAATGGGTCGGAACTGGGGCCAAAACTGGCATGTCAATGCATTACTACAGAACCAACCTCTTTCATTTGAGGTCACTGGTAGTGATGGGCTAACAGTGACATCTTACAATGTCGCTCCCAAGGAATGGAGCTTCGGACAAACCTTTGAAGGCAAGCAATTTGAGTCATAA 834 0.5156 MMGMSMEISFALFATLTILLTLSSTVTSHYSSFSSTTSPAQHSSSSSSPSEWRSAHATYYAAADPRDAVGGACGYGDLVKAGYGMGTVGLSESLFERGQICGACFELRCVDDLRWCIPGTSIIVTATNFCAPNYGFTAEGGGRCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKQGGMRFTVTGSGIYISVLISNVAGAGDIVAVKVKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEVTGSDGLTVTSYNVAPKEWSFGQTFEGKQFES 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3360g00007 277 Gene3D - 183 275 IPR036749 -
Pral3360g00007 277 CDD DPBB_EXPA_N 51 178 - -
Pral3360g00007 277 SMART dpbb_1 87 173 IPR007112 -
Pral3360g00007 277 SUPERFAMILY Barwin-like endoglucanases 51 201 IPR036908 -
Pral3360g00007 277 Gene3D - 35 179 IPR036908 -
Pral3360g00007 277 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Pral3360g00007 277 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Pral3360g00007 277 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Pral3360g00007 277 PRINTS Expansin/Lol pI family signature 166 182 IPR007118 GO:0005576
Pral3360g00007 277 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Pral3360g00007 277 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Pral3360g00007 277 SUPERFAMILY PHL pollen allergen 180 272 IPR036749 -
Pral3360g00007 277 Pfam Expansin C-terminal domain 184 261 IPR007117 -
Pral3360g00007 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 70 183 IPR007112 -
Pral3360g00007 277 Pfam Lytic transglycolase 88 173 IPR009009 -
Pral3360g00007 277 PRINTS Expansin signature 258 274 IPR002963 GO:0009664
Pral3360g00007 277 PRINTS Expansin signature 158 171 IPR002963 GO:0009664
Pral3360g00007 277 PRINTS Expansin signature 182 194 IPR002963 GO:0009664
Pral3360g00007 277 PRINTS Expansin signature 229 250 IPR002963 GO:0009664
Pral3360g00007 277 PRINTS Expansin signature 82 96 IPR002963 GO:0009664
Pral3360g00007 277 PRINTS Expansin signature 141 158 IPR002963 GO:0009664
Pral3360g00007 277 PRINTS Expansin signature 122 132 IPR002963 GO:0009664
Pral3360g00007 277 PRINTS Expansin signature 109 120 IPR002963 GO:0009664
Pral3360g00007 277 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Pral3360g00007 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 193 272 IPR007117 -
Pral3360g00007 277 PANTHER EXPANSIN-A15 16 275 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3360g00007 Pral-Chr3360 48384 75964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3360g00007 51 277 Expansin Gene Family AT3G03220 85.022 1.39e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3360g00007 - - gmx:100809568 444.506