Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3358g00054 ATGGTTTTGTCAGGGACTCTAAGGAAAGTTTTCAGACGCGCCCGCAAAGAGAGAGGCCTTCCCGGCGGTGAACTCGACTTGGAACCTGTGATTCCGACGCATTTCCGGTGCCCGGTGAGCCTTGAACTGATGAAAGATCCGGTGACGCTGTGCACTGGAATAACCTACGACAGAGACAGCATCGAGAGGTGGATTGAATCTGGGAACAACACTTGCCCCGTGACCAAGCAGGTTCTTTCCAGCACTCACATGATCCCAAATCACTCCATTCGGAAAATGATTCAGCACTGGTGCGTCGAGAACCAGTCTTACGGGATCGAAAGAATTCCCACTCCGAGGATCCCGGTCGCGCCGTACGAGGTTTCGGAGACTTGTTCGAGGATAATTGTCGCCACTCGTAATGGGGATGTCAAAACCTGTCAAGAATTGGTGGGGAAAATTAAGAATTGGGGTAAAGAAAGCGAGAGGAACAAGAGGTGTATAGTAGAAAATGGTGCTTGTGCAGTGTTAGCCTCTGCCTTTGATTCTTTCTCGCGTGGGGCCATCGAGGAAAACGAGGTTGCTCTGGATGAGATCTTGGGAGTGCTCCCATGGATGATGAATCCATCTCAAGAAGATGCCAGATCGAAATTGAGGTCTGAGGCATCTTTGAATTGCTTGGTTTGGTTTCTGAATGGGAACGACCTTTCAGCAAGACAAAATGCAGCCATGGTGCTCAAGGAAATGCCTGTGAGAGCTCTAGCTAAAGCTGAAGGTGTGATTGAAGCTTTGGTCAAGATGATTAGAGAGCCTATAGGACCTAATGCAACCAAAGCAAGCTTGACCAAGATTTTCCAGTTGGTTTCCTCGTCAGATGACAAAGAGAGAATCTCACAGAGATTTGTGGAACTGGGTTTGGTTTCTTTATTGCTGGAGGCCATTGTTGATGCAGACAAAAGTATATGTGAGAAGGCTTTGGGTGTTTTGGATTGTCTTTGTGATTGCAAAGAAGGAAAGGAAGCGGCCATGGCTAATGCTCTAGCCTTGCCTCTTGCAACTAAGAAGATTCTAAGGGTATCAGCGTTGGCCACTGAGTTTTCAGTATCCATTCTCTGGAAGCTCTGTGACAAGGAAGATGAAGAGGTTCTAGTTGAAACTGTTCAACTTGGGGCTTTTCAGAAGCTCCTGCTTTTGTTGCAGGTGGGCTGTGAAGAAAGCATGAAGGAGAAGGTCACTGAATTGTTGAAACTGTTGAATGCTTATAGAAGCAGAGCAGAATGTGTCGATTCATCCCTGGATTTTAAGTACCTTAAGAAGCCCTTCTAA 1305 0.469 MVLSGTLRKVFRRARKERGLPGGELDLEPVIPTHFRCPVSLELMKDPVTLCTGITYDRDSIERWIESGNNTCPVTKQVLSSTHMIPNHSIRKMIQHWCVENQSYGIERIPTPRIPVAPYEVSETCSRIIVATRNGDVKTCQELVGKIKNWGKESERNKRCIVENGACAVLASAFDSFSRGAIEENEVALDEILGVLPWMMNPSQEDARSKLRSEASLNCLVWFLNGNDLSARQNAAMVLKEMPVRALAKAEGVIEALVKMIREPIGPNATKASLTKIFQLVSSSDDKERISQRFVELGLVSLLLEAIVDADKSICEKALGVLDCLCDCKEGKEAAMANALALPLATKKILRVSALATEFSVSILWKLCDKEDEEVLVETVQLGAFQKLLLLLQVGCEESMKEKVTELLKLLNAYRSRAECVDSSLDFKYLKKPF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3358g00054 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 104 IPR013083 -
Pral3358g00054 434 Gene3D - 267 412 IPR011989 -
Pral3358g00054 434 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Pral3358g00054 434 Gene3D - 122 264 IPR011989 -
Pral3358g00054 434 CDD RING-Ubox_PUB 32 82 IPR045210 -
Pral3358g00054 434 PANTHER WDSAM1 PROTEIN 28 421 IPR045185 GO:0061630
Pral3358g00054 434 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Pral3358g00054 434 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Pral3358g00054 434 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Pral3358g00054 434 SUPERFAMILY RING/U-box 29 107 - -
Pral3358g00054 434 SUPERFAMILY ARM repeat 132 411 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3358g00054 Pral-Chr3358 428811 430355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3358g00054 21 434 U-box Gene Family AT5G37490 48.931 7.35e-126 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3358g00054 - - qsa:O6P43_014260 551.977