Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3358g00053 ATGACCAGAAGGAAGGTGAAGCTTGCATTCATTGTCAATGAATCTGCAAGGAAGACAACATACAGGAAGAGAAAGAATGGTATGGTGAAGAAGGCAAACGAACTTGCCACCCTTTGTGGGGTTGAGGCATGTATGATAATTTACAGTCCTTATGATACTGAGCCTGAGGTTTGGCCTTCCTCCATGGGAGTCCAAAGCACACTGGTGAGGTTCAGACAGATGCCAGAGATGGAGCAGTGCAAGAAGATGATGAACCAAATGAGCTTCACAAGGGAAAGGATCCAGAAAATCAGTGAGCAGGTGAAGAAGATGAGGAGGAACAATAGGGAGAAGGAGCTGGCCCAGATCATGTATCACTACTTGAGCAGTGGGATTTTTCTGCAGAATATGACTATGAATGATCTCCATGATCTGTCATGGCTGATTGGGCAGAACCTGAGGGATATCAGTAGGAGGATGGAGGCACTGGAGATGGAGCCTCAGAATGAAGTCCAGATCCAAAGTCAGGGACAAGAACAAGCCGGAGAAGATAACAACAATGGAAAGGGAATTATGGAGATGAATATAAGCACATTGCAGAGACAGCAAAATTTTATGGAATTGATGAACTGTGCGGGGGATGAGACACTTCCATTTGGAGAGGCCAATCTCTGTAATGCTTGGTCTAGCCCCTTTTACTTTTGA 684 0.4518 MTRRKVKLAFIVNESARKTTYRKRKNGMVKKANELATLCGVEACMIIYSPYDTEPEVWPSSMGVQSTLVRFRQMPEMEQCKKMMNQMSFTRERIQKISEQVKKMRRNNREKELAQIMYHYLSSGIFLQNMTMNDLHDLSWLIGQNLRDISRRMEALEMEPQNEVQIQSQGQEQAGEDNNNGKGIMEMNISTLQRQQNFMELMNCAGDETLPFGEANLCNAWSSPFYF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3358g00053 227 Coils Coil 80 114 - -
Pral3358g00053 227 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pral3358g00053 227 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Pral3358g00053 227 MobiDBLite consensus disorder prediction 162 183 - -
Pral3358g00053 227 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Pral3358g00053 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pral3358g00053 227 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Pral3358g00053 227 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pral3358g00053 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral3358g00053 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3358g00053 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral3358g00053 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3358g00053 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3358g00053 Pral-Chr3358 425172 425855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3358g00053 1 156 Type I MADS-box Gene Family AT5G48670 50.000 4.77e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral3358g00053 SRF-TF 3.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3358g00053 - - pcin:129298000 396.741