Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3358g00013 ATGGCTACTTCCTTGGATATGTCACTTGATGACAGGATAAAAACCAGAAGTAACAGGGAGAGGGGTAGAGGGCGTGGCAGAGCCCCCCGTGGCCGTGGAGCAGGTCAGAATCTTCGTGGTGGAAGGATGCCTGCTGCAGCTCGTAGAGCTCCTCTGGGAATTAATTCTCGGCCATCTGCTTATGCCATTGCCAAGTCTTTTCGCAGAACCAGGCGTTTTCCATGGCAGCACGATTTATTTGAAGATAGCTTAAAAGCTGCAGGTATACACGGAATAGAAGTGGGCACAAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAACGAAGATATAAGGGAACTTTTTGCGGAGATTGGAGACTTGAAGCGCTATGCAGTTCACTATGACAGAAATGGTCGTCCTAGTGGTTCAGCTGAAGTTGTCTATACAAGAAGGAGCGATGCATTTGCAGCTCTTAAACGGTACAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAAGTTGTTGGTGCCAATGCAGAATTGCCTGTATCAGCTCGTGTGAATGTTTCTGGGATAAATGGGCAGAGGAAGAGGACAGTTGTCATGACGCCTGGAGGTCGACCTGGAGGTAGAGCTGGAGGTCCTGCTATGTTTAATCGTGGTGCAGGCTGGGGACGCCGTGGTGGTGGAAGGAGCGGTGGTGGGGGTATGCGTGGTCGAGGTGGTGGACGGGGTCGCGGTCGTGGTCGCGGTCGAGGGCGTGGTAAGAAGGATGGGGTTGAGAAGTCTGCTGAGGAACTTGACAAGGAACTGGAGACTTATCATGCGGATGCCATGCACATCTCATGA 837 0.5066 MATSLDMSLDDRIKTRSNRERGRGRGRAPRGRGAGQNLRGGRMPAAARRAPLGINSRPSAYAIAKSFRRTRRFPWQHDLFEDSLKAAGIHGIEVGTKLYVSNLDHGVTNEDIRELFAEIGDLKRYAVHYDRNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEVVGANAELPVSARVNVSGINGQRKRTVVMTPGGRPGGRAGGPAMFNRGAGWGRRGGGRSGGGGMRGRGGGRGRGRGRGRGRGKKDGVEKSAEELDKELETYHADAMHIS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3358g00013 278 CDD RRM_THOC4 96 169 - -
Pral3358g00013 278 SUPERFAMILY RNA-binding domain, RBD 26 170 IPR035979 GO:0003676
Pral3358g00013 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Pral3358g00013 278 MobiDBLite consensus disorder prediction 1 44 - -
Pral3358g00013 278 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 276 - -
Pral3358g00013 278 SMART FoP_duplication_2 201 278 IPR025715 -
Pral3358g00013 278 MobiDBLite consensus disorder prediction 199 278 - -
Pral3358g00013 278 Gene3D - 92 172 IPR012677 -
Pral3358g00013 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Pral3358g00013 278 MobiDBLite consensus disorder prediction 9 24 - -
Pral3358g00013 278 Pfam C-terminal duplication domain of Friend of PRMT1 219 272 IPR025715 -
Pral3358g00013 278 Coils Coil 253 273 - -
Pral3358g00013 278 SMART rrm1_1 97 169 IPR000504 GO:0003723
Pral3358g00013 278 MobiDBLite consensus disorder prediction 250 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3358g00013 Pral-Chr3358 79233 84954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3358g00013 95 170 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 9.04e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3358g00013 K12881 - gmx:100801491 342.428