Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3356g00003 ATGGAAGAAGCGTTAGAAAAACTGTGTGCTGATGAGATTAGTAGAAGACGAGAGCTTGAAGAGCTATTGGCTACAGAAAAGCAAGAATTACAAAAACTGAAAGACCAACAAGACGAAATCATGGGCGAACTGCGAATGATCCAAGATCAAAATTCAGCTCTTAACGGCCAAGCTGTTGAGTCCCAGACTGTGGTGACAGAGTTGGAGGAGAAAATTTTTTCAGCAGTGGAACTCTTGATAAGCTTTAAGGACAAACGAGATAAGTTAAAGATTGAGCATTCAAATGCAGTCAGGGAAGTCAACAAGTTGAGGAAATTTGTAAACATGGATACTGAATATCCTCATGGAACAGAATTTCCTACATTTTCATTCTTAGAGATCAATGAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAGGGAAGGCATGGAAGTGTTTACAAAGGGATGCTTCGCAATATGCAAGTTGCCATAAAGATGTTGCCCTCTTATGGCTGTCAAAGTCAACTGGAGTTTCAACATCAGGTTGAGGTTTTGAGCAGGGTAAGACATCCAAGCCTTGTAACACTGATTGGAAGCTGCCCAGAATCTAGGTCACTTGTCTATGATTACCTTAATAATGGCAGCCTTGAGGACCATCTTGCCCGCAAAGAGAAGACTCCACTTCCTTGGCAAATTCGAATTTCCATTTCTGCTGATATATGCTCTGCTCTTATCTTCCTTCACTCCGGCAGGCCTTCTATAATCCATGGGAATTTGAAGCCCAGTAAAATTCTCCTTGATGTAAACTTTGTTGCCAAACTTTGTGATTTGGGCATTTCTTCTTTAGTCCAGCGCAGTGGGCATTCAGCTGACAGTAACACAACAGTTGACAAAGGAAATGAAAGTTTGGTGTATGTGGATCCAGAATTTCTTCTCACTGGGAAGCTCACACCAGAATCCGATGTGTATTCATTTGGAATCATATTGTTACAACTTTTAACTGGCAGGCCTCTTTCAGGAATAGTAAGGGATACAAAATGTGCATTGGAGAAGGAAAATCTCAAAGCGGTATTGGACACTTCAGCTGGAGAATGGCCACTTTATCAAGTCGAACAGCTAGCATATTTGGCATTGAGGTGTTCTGAGAAGACTCCGCTGAACCGGCCAGACCTTTTGTCAGAAATCTGGAGTGCCCTCGGACCATTACGAACTTCATGCAGTAATATGTCACTATTTTCTACTTCCAAGAAGCTTCACCGCCCTCCTTCTCACTTTGTCTGCCCCATATTTCAGGAGGTCATGAAAGATCCTTATATAGCTGCAGATGGCTTTACATATGAAGAAGACGCAATAAGAGGATGGTTGGATAGTGGTCACAACACCTCGCCAATGACAAACCTGAAACTTGAACACACCAACCTGGTGCCTAATTATGCATTACTTAGTGCGATTCAGGAGTGGAAGCACCTGCAATAA 1464 0.4221 MEEALEKLCADEISRRRELEELLATEKQELQKLKDQQDEIMGELRMIQDQNSALNGQAVESQTVVTELEEKIFSAVELLISFKDKRDKLKIEHSNAVREVNKLRKFVNMDTEYPHGTEFPTFSFLEINEATNDFDPSWKIGEGRHGSVYKGMLRNMQVAIKMLPSYGCQSQLEFQHQVEVLSRVRHPSLVTLIGSCPESRSLVYDYLNNGSLEDHLARKEKTPLPWQIRISISADICSALIFLHSGRPSIIHGNLKPSKILLDVNFVAKLCDLGISSLVQRSGHSADSNTTVDKGNESLVYVDPEFLLTGKLTPESDVYSFGIILLQLLTGRPLSGIVRDTKCALEKENLKAVLDTSAGEWPLYQVEQLAYLALRCSEKTPLNRPDLLSEIWSALGPLRTSCSNMSLFSTSKKLHRPPSHFVCPIFQEVMKDPYIAADGFTYEEDAIRGWLDSGHNTSPMTNLKLEHTNLVPNYALLSAIQEWKHLQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3356g00003 487 SMART Ubox_2 420 483 IPR003613 GO:0004842|GO:0016567
Pral3356g00003 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 487 IPR013083 -
Pral3356g00003 487 ProSiteProfiles U-box domain profile. 416 487 IPR003613 GO:0004842|GO:0016567
Pral3356g00003 487 Coils Coil 9 50 - -
Pral3356g00003 487 Gene3D Transferase(Phosphotransferase) domain 1 207 402 - -
Pral3356g00003 487 SUPERFAMILY RING/U-box 413 484 - -
Pral3356g00003 487 Gene3D Phosphorylase Kinase; domain 1 106 206 - -
Pral3356g00003 487 ProSitePatterns Protein kinases ATP-binding region signature. 140 161 IPR017441 GO:0005524
Pral3356g00003 487 PANTHER OS02G0152300 PROTEIN 2 482 - -
Pral3356g00003 487 SUPERFAMILY Protein kinase-like (PK-like) 111 387 IPR011009 -
Pral3356g00003 487 Pfam Protein tyrosine and serine/threonine kinase 139 387 IPR001245 GO:0004672|GO:0006468
Pral3356g00003 487 CDD RING-Ubox_WDSUB1-like 418 473 - -
Pral3356g00003 487 ProSiteProfiles Protein kinase domain profile. 134 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3356g00003 487 Pfam U-box domain 418 484 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3356g00003 Pral-Chr3356 35652 49703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3356g00003 3 485 U-box Gene Family AT3G49060 54.115 7.38e-177 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pral3356g00003 PK_Tyr_Ser-Thr 5.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3356g00003 - - pcin:129304798 845.114