Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3356g00002 ATGGTGAGCAGCAATGTAGAAGACAACAGTACTATCAAGGAAGAAGCGTTAGAAAAACTGTGTGCTGATGAGATTAGTAGAAGACGAGAGCTTGAAGAGCTATTGGCTACAGAAAAGCAAGAATTACAAAAACTGAAAGACCAACAAGACGAAATCATGGGCGAACTGCGAATGATCCAAGATCAAAATTCAGCTCTTAACGGCCAAGCTGTTGAGTCCCAGACTGTGGTGACAGAGTTGGAGGAGAAAATTTTTTCAGCAGTGGAACTCTTGATAAGCTTTAAGGACAAACGAGATAAGTTAAAGATTGAGCATTCAAATGCAGTCAGGGAAGTCAACAAGTTGAGGAAATTTGTAAACATGGATACTGAATATCCTCATGGAACAGAATTTCCTACATTTTCATTCTTAGAGATCAATGAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAGGGAAGGCATGGAAGTGTTTACAAAGGGATGCTTCGCAATATGCAAGTTGCCATAAAGATGTTGCCCTCTTATGGCTGTCAAAGTCAACTGGAGTTTCAACATCAGGTTGAGGTTTTGAGCAGGGTAAGACATCCAAGCCTTGTAACACTGATTGGAAGCTGCCCAGAATCTAGGTCACTTGTCTATGATTACCTTAATAATGGCAGCCTTGAGGACCATCTTGCCCGCAAAGAGAAGACTCCACTTCCTTGGCAAATTCGAATTTCCATTTCTGCTGATATATGCTCTGCTCTTATCTTCCTTCACTCCGGCAGGCCTTCTATAATCCATGGGAATTTGAAGCCCAGTAAAATTCTCCTTGATGTAAACTTTGTTGCCAAACTTTGTGATTTGGGCATTTCTTCTTTAGTCCAGCGCAGTGGGCATTCAGCTGACAGTAACACAACAGTTGACAAAGGAAATGAAAGTTTGGTGTATGTGGATCCAGAATTTCTTCTCACTGGGAAGCTCACACCAGAATCCGATGTGTATTCATTTGGAATCATATTGTTACAACTTTTAACTGGCAGGCCTCTTTCAGGAATAGTAAGGGATACAAAATGTGCATTGGAGAAGGAAAATCTCAAAGCGGTATTGGACACTTCAGCTGGAGAATGGCCACTTTATCAAGTCGAACAGCTAGCATATTTGGCATTGAGGTGTTCTGAGAAGACTCCGCTGAACCGGCCAGACCTTTTGTCAGAAATCTGGAGTGCCCTCGGACCATTACGAACTTCATGCAGTAATATGTCACTATTTTCTACTTCCAAGAAGCTTCACCGCCCTCCTTCTCACTTTGTCTGCCCCATATTTCAGGAGGTCATGAAAGATCCTTATATAGCTGCAGATGGCTTTACATATGAAGAAGACGCAATAAGAGGATGGTTGGATAGTGGTCACAACACCTCGCCAATGACAAACCTGAAACTTGAACACACCAACCTGGTGCCTAATTATGCATTACTTAGTGCGATTCAGGAGTGGAAGCACCTGCAATAA 1500 0.422 MVSSNVEDNSTIKEEALEKLCADEISRRRELEELLATEKQELQKLKDQQDEIMGELRMIQDQNSALNGQAVESQTVVTELEEKIFSAVELLISFKDKRDKLKIEHSNAVREVNKLRKFVNMDTEYPHGTEFPTFSFLEINEATNDFDPSWKIGEGRHGSVYKGMLRNMQVAIKMLPSYGCQSQLEFQHQVEVLSRVRHPSLVTLIGSCPESRSLVYDYLNNGSLEDHLARKEKTPLPWQIRISISADICSALIFLHSGRPSIIHGNLKPSKILLDVNFVAKLCDLGISSLVQRSGHSADSNTTVDKGNESLVYVDPEFLLTGKLTPESDVYSFGIILLQLLTGRPLSGIVRDTKCALEKENLKAVLDTSAGEWPLYQVEQLAYLALRCSEKTPLNRPDLLSEIWSALGPLRTSCSNMSLFSTSKKLHRPPSHFVCPIFQEVMKDPYIAADGFTYEEDAIRGWLDSGHNTSPMTNLKLEHTNLVPNYALLSAIQEWKHLQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3356g00002 499 Pfam U-box domain 430 496 IPR003613 GO:0004842|GO:0016567
Pral3356g00002 499 ProSiteProfiles U-box domain profile. 428 499 IPR003613 GO:0004842|GO:0016567
Pral3356g00002 499 SUPERFAMILY RING/U-box 425 496 - -
Pral3356g00002 499 Gene3D Transferase(Phosphotransferase) domain 1 219 414 - -
Pral3356g00002 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 428 499 IPR013083 -
Pral3356g00002 499 CDD RING-Ubox_WDSUB1-like 430 485 - -
Pral3356g00002 499 ProSiteProfiles Protein kinase domain profile. 146 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3356g00002 499 Pfam Protein tyrosine and serine/threonine kinase 151 399 IPR001245 GO:0004672|GO:0006468
Pral3356g00002 499 SMART Ubox_2 432 495 IPR003613 GO:0004842|GO:0016567
Pral3356g00002 499 PANTHER OS02G0152300 PROTEIN 10 494 - -
Pral3356g00002 499 ProSitePatterns Protein kinases ATP-binding region signature. 152 173 IPR017441 GO:0005524
Pral3356g00002 499 Coils Coil 21 62 - -
Pral3356g00002 499 SUPERFAMILY Protein kinase-like (PK-like) 123 399 IPR011009 -
Pral3356g00002 499 Gene3D Phosphorylase Kinase; domain 1 118 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3356g00002 Pral-Chr3356 35652 49709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3356g00002 7 497 U-box Gene Family AT3G49060 54.309 9.67e-178 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pral3356g00002 PK_Tyr_Ser-Thr 6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3356g00002 - - pcin:129304798 857.44