Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3355g00012 ATGGATGTGGTTCGTTCACCAAGTATGTTTGTTATTGTTCTTCTTCTTCCCTTTCTGCTTTCCTCTTGTGCCTATGGCTACTCATTAGATGAAGTCAAGCCATGGTGTAGCCAAACCCCTAACCCTCAGCCATGTGAATACTTCTTGATGAGCTCCAAAACTTACAATAAACCCATAAAGCAAAAATCAGATTTCTTCAAACTTTCAGTCCACCTTGCCCTTGATAGAGCTCAAAAGGGCCTAACCAAGACTCTCTCACTTGGCCCTAAGTGTAGGAACGCACGTGAGAAAGCTGCTTGGTCTGATTGCCTTGAGCTCTATCAGCAAACCATCAATAGGATCTCAAAAACTGCAAGCCCTAATTCCAAATGTACCCAAGTCGATGCTCAAACATGGCTTAGCACAGCCTTGACCAACCTCGAAACGTGCATACTTGGGTTTTACGACCTCGGAGTTACAGACTATGTTTTGCCTTTGATGTATGATAATGTTACTCAGTTGTTAAGCAATGCCTTATCTCTTAACAAGGCTCTATACGCTCCGCCAAGTTTCAAAGATGGGTTGCCTTCTTGGGTTAAGCCCGGTGACCGGAAACTGTTGCAGGTGGCCTCACCGGCTTCTCAAGCTAATGTCGTGGTGGCCAAAGACGGTTCTGGCAAGTATAAAACCTTGAAGGAGGCCGTAGATGCTGCACCAAAGAGTAATAAGGGAAGGTATGTTATATTTGTGAAGGCAGGAGTTTACAATGAACAAGTTGAGATAAAAGGGAATAATATTATGTTGTCGGGAGATGGCATTGGAAAGACTATAATCACGGGTAGCAAAAGTGTTGGAGGAGGCACTACAACCTTCCATTCAGCTACTGTTGCTGCTGTGGGAGATGGATTTATTGCAAGAGACATGACATTTAGAAACACAGCTGGACCATCAAACCACCAAGCCGTGGCACTCAGATCAGGTTCAGATCTCTCAGTGTTCTATCGATGCAGCTTTGAGGGATACCAAGACACACTCTATGTGCATTCCCAAAGACAATTCTACAGGGAATGTGACGTTTACGGCACAGTTGACTTCATCTTTGGTAACGCAGCTGCTGTTCTACAAAACTGCAATCTGTATGCAAGAACTCCTCCTCAAAAGACCATCACATTCACAGCTCAAGGCCGAACTGATCCAAATCAGAACACCGGCATCATTGTTCACAATTCTAAGGTCACTGGCGCGTTGGACTTCAACTTGAACAACGTTGAGTCTTACCTTGGAAGGCCATGGCAGAAGTATTCAAGGACAGTGTTCATGAAGTGTTCTCTTGGCAGTTTGATTGACCCAGCAGGGTGGACGCCGTGGAGTGGTAATTTTGCTTTGGACACTGTGTATTACGCTGAGTATGCAAATACAGGACCTGGCTCTTCAACTTCAAATAGGGTTAAGTGGAAGGGTTACCGTGTGATTGGTGCTTCTGAGGCCTCACAGTTCACTGTTGGCCGTTTTCTTTCTGGAGGTTCATGGTTACCAGCCACTGGTGTGCCTTTCACTTCGGGTCTTTAA 1548 0.4522 MDVVRSPSMFVIVLLLPFLLSSCAYGYSLDEVKPWCSQTPNPQPCEYFLMSSKTYNKPIKQKSDFFKLSVHLALDRAQKGLTKTLSLGPKCRNAREKAAWSDCLELYQQTINRISKTASPNSKCTQVDAQTWLSTALTNLETCILGFYDLGVTDYVLPLMYDNVTQLLSNALSLNKALYAPPSFKDGLPSWVKPGDRKLLQVASPASQANVVVAKDGSGKYKTLKEAVDAAPKSNKGRYVIFVKAGVYNEQVEIKGNNIMLSGDGIGKTIITGSKSVGGGTTTFHSATVAAVGDGFIARDMTFRNTAGPSNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDVYGTVDFIFGNAAAVLQNCNLYARTPPQKTITFTAQGRTDPNQNTGIIVHNSKVTGALDFNLNNVESYLGRPWQKYSRTVFMKCSLGSLIDPAGWTPWSGNFALDTVYYAEYANTGPGSSTSNRVKWKGYRVIGASEASQFTVGRFLSGGSWLPATGVPFTSGL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3355g00012 515 NCBIfam pectinesterase inhibitor domain 9 178 IPR006501 GO:0004857
Pral3355g00012 515 FunFam Pectinesterase 204 515 - -
Pral3355g00012 515 Pfam Plant invertase/pectin methylesterase inhibitor 31 174 IPR006501 GO:0004857
Pral3355g00012 515 PANTHER PECTINESTERASE 15 505 - -
Pral3355g00012 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 178 IPR035513 -
Pral3355g00012 515 CDD PMEI-like_3 35 178 - -
Pral3355g00012 515 SMART PMEI_2 27 174 IPR006501 GO:0004857
Pral3355g00012 515 Gene3D - 205 515 IPR012334 -
Pral3355g00012 515 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Pral3355g00012 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 178 IPR035513 -
Pral3355g00012 515 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Pral3355g00012 515 Pfam Pectinesterase 210 500 IPR000070 GO:0030599|GO:0042545
Pral3355g00012 515 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Pral3355g00012 515 SUPERFAMILY Pectin lyase-like 204 514 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3355g00012 Pral-Chr3355 1100962 1103988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3355g00012 14 515 Carbohydrate Esterase AT2G45220 68.047 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3355g00012 K01051 - gmx:100782892 782.326