Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral334g00006 | ATTTCGATCAATTTGTATGAGCAGTTCATTCAGAAAGTTCATCTTTTCAAGGGATGCTCTTCTGGGTTCATTAAACATGTTGCAATCAATGTCCATGAGGAGTTTTTTCTCCCAGGAGAAGTTATTATGGAGCAAGGAGATGTAGCAGATCAGCTTTACCTTGTATGCCATGGTGAGCTGGATGAGCTCAGGAAGGAAGATGATGAAAGGGAAGAACTAGTTAAGCAATATCAAGCCTATAGTTCCTTTGGCGAGGTTTCCTTTCTTTGCAATTTGCCTCAACCTTGTATGGTTCGCGCTCGTGAATTTTGCAAAGTTCTGCGTCTAGATAAGATATCCTTTACAGAAACACTCAGGACATACTTCTTAGATCGTCGGGTTATCTTGCAAAATCTTCTTGAGGGAAAAGACTCTGGTCTTCAGCATAAGCTTTTGGAATCAGACTTCACCCTGACAATTGGAAATTGCGAAACAGAGCTGGCTATGAGGATTAATTGTGCTGCCTACGAGGGGGATCTCTATCTTTTGAAACATTGGGTTGAGTCAGGACTAGATCCCAACAGAACTGATTATGATGGAAGATCACCTTTGCATATTTCTGCATCCAAAGGATATGTAGATATTGCTCGCTTTCTTATTGACAAAGGAGTGAATATTGATTTATCAGACAAGTTTGGGAATACTCCCTTGTTTGAAGCCATAAAGAATGGGCATGAAGAAGTAGCCTCTTTACTTGTAAATAATGGGGCTACTCTTGCCATTGAAGACGCTGGAAGTCTCCTATGCATGACTATTGCAACGAAGGAACTGGACCTTCTAAGAAAGCTTTTAGCCTATGGTATAAATCCAAATTCTAGAAATTACGATCAACGAACAGCTCTTCACATAGCTGCCTCGGAGGGTTTGTTCACAGTTGCTGAAATGCTCATAGAAGCAGGAGCAAGTGTTTTATCAACGGACAGGTGGGGATATACACCACTTGATGAAGCTCGCATAGGTGGAAACAGGAACATGATCAGATTGCTTGAAGTGGCAAAAATTTCTCAGCTGACTGAGATATCAGATGATATTCAGGAAACACAAGAGATAGCAGAAACACTTGTCTCGACATCTAGAGATGTAAATCCGAAAAAGAAATGCACGGTATTTCCTTTCCACCCATGGGATCACAAAAAGGATGGAAGGGTAGGAGCTGTCCTGTGGGTTCCTGGAAGCATTGAAGAGCTAATAGAGATGGCAAGAGAACAATTCAAGTCTCCAAATGGTTCCTGCATTTTATCTCAGCATGGGGGTAGAATTCTTGATGTAGACATGATCAGCAATGATGAGCCGCTATTTCTAATAATTGAACCACACATTGAGGGCCAAAGAAAAGAAGAAGAATGTTCTGCCCATCCTAATGAGCAGGAGCAACACTAA | 1419 | 0.4137 | ISINLYEQFIQKVHLFKGCSSGFIKHVAINVHEEFFLPGEVIMEQGDVADQLYLVCHGELDELRKEDDEREELVKQYQAYSSFGEVSFLCNLPQPCMVRAREFCKVLRLDKISFTETLRTYFLDRRVILQNLLEGKDSGLQHKLLESDFTLTIGNCETELAMRINCAAYEGDLYLLKHWVESGLDPNRTDYDGRSPLHISASKGYVDIARFLIDKGVNIDLSDKFGNTPLFEAIKNGHEEVASLLVNNGATLAIEDAGSLLCMTIATKELDLLRKLLAYGINPNSRNYDQRTALHIAASEGLFTVAEMLIEAGASVLSTDRWGYTPLDEARIGGNRNMIRLLEVAKISQLTEISDDIQETQEIAETLVSTSRDVNPKKKCTVFPFHPWDHKKDGRVGAVLWVPGSIEELIEMAREQFKSPNGSCILSQHGGRILDVDMISNDEPLFLIIEPHIEGQRKEEECSAHPNEQEQH | 472 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral334g00006 | 472 | ProSiteProfiles | Ankyrin repeat profile. | 225 | 257 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | PANTHER | POTASSIUM CHANNEL AKT1 | 1 | 447 | IPR045319 | GO:0005249|GO:0006813 | |
| Pral334g00006 | 472 | Gene3D | - | 157 | 256 | IPR036770 | - | |
| Pral334g00006 | 472 | ProSiteProfiles | KHA domain profile. | 379 | 465 | IPR021789 | - | |
| Pral334g00006 | 472 | Pfam | Ankyrin repeats (many copies) | 276 | 330 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | ProSiteProfiles | Ankyrin repeat profile. | 289 | 321 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | PRINTS | Ankyrin repeat signature | 193 | 208 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | PRINTS | Ankyrin repeat signature | 305 | 319 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | ProSiteProfiles | Ankyrin repeat region circular profile. | 289 | 321 | - | - | |
| Pral334g00006 | 472 | ProSiteProfiles | Ankyrin repeat region circular profile. | 225 | 256 | - | - | |
| Pral334g00006 | 472 | Pfam | Ankyrin repeats (3 copies) | 166 | 255 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | Pfam | KHA, dimerisation domain of potassium ion channel | 378 | 447 | IPR021789 | - | |
| Pral334g00006 | 472 | FunFam | Potassium channel KAT2 | 3 | 139 | - | - | |
| Pral334g00006 | 472 | SMART | cnmp_10 | 15 | 133 | IPR000595 | - | |
| Pral334g00006 | 472 | SUPERFAMILY | cAMP-binding domain-like | 2 | 133 | IPR018490 | - | |
| Pral334g00006 | 472 | Gene3D | - | 257 | 353 | IPR036770 | - | |
| Pral334g00006 | 472 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 15 | 135 | IPR000595 | - | |
| Pral334g00006 | 472 | ProSiteProfiles | Ankyrin repeat region circular profile. | 192 | 224 | - | - | |
| Pral334g00006 | 472 | SMART | ANK_2a | 322 | 352 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | SMART | ANK_2a | 192 | 221 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | SMART | ANK_2a | 225 | 254 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | SMART | ANK_2a | 159 | 188 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | SMART | ANK_2a | 256 | 285 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | SMART | ANK_2a | 289 | 318 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | ProSiteProfiles | Ankyrin repeat profile. | 192 | 224 | IPR002110 | GO:0005515 | |
| Pral334g00006 | 472 | CDD | CAP_ED | 15 | 129 | IPR000595 | - | |
| Pral334g00006 | 472 | Gene3D | Jelly Rolls | 1 | 146 | IPR014710 | - | |
| Pral334g00006 | 472 | Pfam | Cyclic nucleotide-binding domain | 35 | 120 | IPR000595 | - | |
| Pral334g00006 | 472 | SUPERFAMILY | Ankyrin repeat | 164 | 342 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral334g00006 | Pral-Chr334 | 93503 | 98394 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral334g00006 | 5 | 321 | Ion Channels | AT5G37500 | 51.622 | 2.39e-114 | 350 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral334g00006 | K21867 | - | gmx:100798698 | 585.874 |