Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral334g00004 ATGGTTCTGGGATGGCGAAGAAGAAAGAACGGCCGTCGCAACGACAAACTTCAGCTCGAGGTCGTCGTTCCCAACCACTTCCGGTGCCCGATTTCCCTCGATTTGATGAAAGATCCTGTCACATTGTCCACCGGCGTCACCTACGATCGTGATAACATCGAAAGGTGGTTCCTTGAAGGCAATTTCACTTGCCCCGTTACCAACCAGGTCCTCAGGAGCTTCGATCTCATTCCCAATCACACTCTTCGCATAATGATTCAGGAATGGTGTGTTGAAAATCGACAACATGGGGTCGAGAGAATCCCTACTCCCAGAATTCCCATTTCCCCCGTCCAAGTCGAAGAGCTTCTTCTTCTTGTGAAATCGTCGGCGAGGCGTTTGGATCAGTACGGGTGTCTCAACTTGGTTCAGAAAATGGAGAAATGGGGTGAAGAGAGCGAAAGGAATAAGAAGTGTATAGTTGAGAATGGAGCCACTGCTGCTCTGGCCTCTGCTTTTGACGCGTTCGCGAATGATTCGATTGAGAAGAATCTGAGTGTTTTGGAAGAGATTTTGTCTGCTCTGAATTGGATGTTCCCACTTCAAATGGAAGCCCAGAAATCGTTGGGGTCACAAGCTTCGTTAGGTTGCATGGTGTGGTTTCTGAAACATCAAGATCTGGCAGGGAAAGAGAAGTCCATTGTTGCTCTCAGGGAGCTTCTCTCTTTTGGAAACGAAGACCATTTGAACGTTCTGGCAGAAATTGAAGGAGTCAACGAACTATTGGTGGAATTCATTACAAAAAGACTGAGTCCAACAATCACAAAAGCTTCATTAGCTGTAGTTTTCTATATGGTCTCATCATCCTCTTCCTCAAGCAACAAAATGAAACAGAGATTCATCCAACTGGGTTTGGTCTCTTCTTTACTGGACATTCTCCTGGACTCAGAAAGAAGCCTCTGTGAGAAGGCTTTGGCAATTTTCGATTCACTCTGCTCTTGCGAGGAAGGCAGAGAAAAAGCTTACAATAACGCCTTGACGATCCCTGTGTTGGTGAAGAAGATACTGAGAGTTTCAGCAATGGCTACAGATTCCTCTGTTTCTGCAATATGGAGGCTGTGCAAGAATGGAGCAGAGAAAGAAGAAGAAGAAGAAGAAGGAAAAAGCGTTCCGATTGAAGCACTGCAAGTCGGTGCGTTTCAGAAGCTTTTGTTAGTTTTGCAGATTGGATGTGGCGATGAAACGAAGGTGAAAGCAACTGAGCTTCTCAAACTCCTGAATCGATATGGCTCAGGCGTGGATTGTGTAGACTCAGATTTCAAGAACCTAAAGAGATCACATTAG 1323 0.4565 MVLGWRRRKNGRRNDKLQLEVVVPNHFRCPISLDLMKDPVTLSTGVTYDRDNIERWFLEGNFTCPVTNQVLRSFDLIPNHTLRIMIQEWCVENRQHGVERIPTPRIPISPVQVEELLLLVKSSARRLDQYGCLNLVQKMEKWGEESERNKKCIVENGATAALASAFDAFANDSIEKNLSVLEEILSALNWMFPLQMEAQKSLGSQASLGCMVWFLKHQDLAGKEKSIVALRELLSFGNEDHLNVLAEIEGVNELLVEFITKRLSPTITKASLAVVFYMVSSSSSSSNKMKQRFIQLGLVSSLLDILLDSERSLCEKALAIFDSLCSCEEGREKAYNNALTIPVLVKKILRVSAMATDSSVSAIWRLCKNGAEKEEEEEEGKSVPIEALQVGAFQKLLLVLQIGCGDETKVKATELLKLLNRYGSGVDCVDSDFKNLKRSH 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral334g00004 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Pral334g00004 440 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Pral334g00004 440 SUPERFAMILY ARM repeat 144 406 IPR016024 -
Pral334g00004 440 CDD RING-Ubox_PUB 24 76 IPR045210 -
Pral334g00004 440 PANTHER WDSAM1 PROTEIN 20 426 IPR045185 GO:0061630
Pral334g00004 440 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Pral334g00004 440 FunFam RING-type E3 ubiquitin transferase 23 94 - -
Pral334g00004 440 Gene3D - 116 425 IPR011989 -
Pral334g00004 440 SUPERFAMILY RING/U-box 20 99 - -
Pral334g00004 440 Pfam U-box domain 23 94 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral334g00004 Pral-Chr334 76436 78012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral334g00004 5 438 U-box Gene Family AT5G37490 43.946 1.31e-117 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral334g00004 - - gmx:100817623 630.172