Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3347g00001 ATGGGGGATTTCTGGAGCGTCTTTTGTGGTGAATCTGGTTGTTCAGAACCAGGGGAAAGCCCTTGTAGTTATGGTTTCGAGTTCTTGAGAGATCCTTCGTCTTGCATCAATCATTCGTTGATTATTTGCCTCGATGTGTTGCTGCTGATTATGCTTATAATCACTGCAATAAAGAGGTCATCCCCGCAGACAGTTCACCACCATGCCCAGGTACAGAGGTTTTCGAAGTTGCAGGTGGCTTCTGCAATAGTGAATGGTTGTCTTGGGTTAGTTCATTTGTTCTTGGGCGTTTGGGTCTTAGAGGAGAAATTGAGGAAAACTCACACTGCCTTTCCTATCCATTTGTGGTTTCTAGAGTTTTCGCAGGGGTTTACATGGTTGTTGGTGGGTTTAACAACAAGTCTTAGGTTGAAAGACCTTTCAAAACCATGGTTGAAGCTATTGTCTATTCTTTTCTTCTTAGTTTCTGGTGTTTTCTGTGTCATTTCCATTTTGTATGCCAGTAGTGGCCGAGAAGTGTCACTTAAGGTAGCTTTAGATATTGTATCTTTTCCAGGAGCAATATTGTTGCTCGTGTGCTCTTATAAGCGGTCTACGTATGCAGACACTGATGGAAAAATTGATGAAAGTCTTTATGCTCCTTTAAACGGCCACCATTCCACTGATGCTGGCAAAACTAGTTCTTTCAACGATGTAACTCCATTTGCCACAGCTGGATTCTTCAGCAAAATGACGTTTTGGTGGTTGAATCCATTGATGAAAAGGGGTAAGGAGAAAACACTCGAGGATGAAGACGTCCCAAAGTTGCGGGAGGAAGATCAAGCCCAAAGTTGCTATTTGATGTTTTTGGATCAATTGAACCGACAGAAACAAAGGGAACCATCGTCGCAGCCATCACTTTTGTGGACAATCTTGTTGTGCCATTGGAAAGATATATTGTTCTCTGGGTTTTATGCATTGCTGAAGGTGCTCACTATCTCTGCTGGTCCAGTGCTTCTGAATTCTTTCATACTGGTTGCTGAGGGTAAAGGGAGTTACCAATATGAAGGGTATGTATTGGCCATATTACTTTTCCTGACCAAGATCATAGAGTCAGTATCACAAAGGCAGTGGTATTTCCTAAGCAGGCTCACTGGTTTAAAAGTTAGATCATTTCTTACTGCAGCGATTTATAAAAAGCAATTGAGGATATCTAATGCTTCGAAGTTGGTGCATTCAAGTGGGGAGATTATGAATTATGTGACGGTAGATGCTTATAGAATTGGAGAATTCCCGTTTTGGTTTCACCAGATTTGGACTACAAGTCTTCAACTGTGCATTGCATTAATAGTTCTTTTCCGTGCTGTGGGGCTTGCAACATTTGCTGCCTTGGCAGTAATAGTCCTCACTGTGCTTTGCAATACTCCACTTGCAAAGTTACAGCATAAGTATCAGACCAAACTTATGGTGGCACAGGATGAAAGATTGAAGGCTAGTTCTGAGGCTTTAGTGAATATGAAAGTACTGAAACTATATGCGTGGGAAACCCATTTCAAGAGGGCAATAGAATGTTTGAGGAAAGTGGAGTTGAAATGTTTGTCTGCATTACAGTTGAGAAAGGCATACATCACCTTTCTCTTTTGGTCTTCACCTGTTATGGTATCTGCTGCTTCATTTGGGGCATGCTACTTCCTCAAAATCCCGTTACATGCAAATAATGTTTTCACCTTTGTGGCCAGTTTACGCCTTGTTCAGGATCCAATCAGGACCATGGCTGATGTTATTGGGATGCTTATTCAAGCAAAAGTAGCATATACTCGGATTGTGAAATTCCTTGAGGCACCAGAGCTACTGAATGCAAACGTCAAAAAGAGGAACTTAGGTGACAGGCTCAAGGGCTCCATCCTAATCAACTCAGCTGACTTTTCTTGGGAGGGTAATGCTTCAAAGCCCACTCTAAGAAACATAAATCTAGTGGTTAAACCAGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGTTCTGGAAAATCAACCCTATTAGCTGCAATTCTTGGTGAAGTTCCTAATACTCGTGGAACTATAGAAGTTCACGGAAAGTTTGCTTATGTTTCTCAAACAGCATGGATACAGACAGGCACAGTAAGGGAGAATATTTTGTTTGGTTCAACTATGGATTCTCAGAGGTATCAAGAAACACTTGAAAGATCATCCTTAGTGAAGGATCTAGAGTTATTTCCCCATGGCGATTTCACTGAAATAGGGGAGAGAGGAGTAAACTTGAGTGGAGGTCAGAAGCAGCGAATTCAGCTTGCTCGTGCTCTTTATCAGAATGCTGATATATATGTCTTGGATGATCCATTCAGTGCTGTTGATGCGCACACTGCCACAAATTTGTTTAATGAATATGTCATGGATGCACTTCAGGGAAAGACAGTCTTACTTGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTCTATTTTGCTCATGTCTGATGGAGAAATTAGACAAGCTGCCTCATATGACTATCTACTGGCTTCAAGCCAGGAATTTCAGGATCTTGTCAATGCTCACAAGGAGACTGCTGGTTCTGAAAGGCTTGTGAATGTGACGTCTGCTCAGGCAGGACCAAGTTCTGCTAAGGAGATTATTAAATCATATGTGGAGAAGGAATTTAAGGCTTCAAATGGTGATCAGTTAATTAAACAAGAAGAAAGAGAAACAGGAGACAATGGGCTAAAGCCTTACTTTCAATATCTGAATCAGAGGAGGGGTTATTTATACTTCTCCTTGGCTGCCCTTTCCCACCTTACGTTTGTGATTGGTCAGGTATTACAGAACTCATGGATGGCTGCTAATGTTGACAATCCTCATGTGAGCACGTTGCGATTGATTTCAGTATACTTGTTGATTGGAGTTGGTTCAACAATTTTCTTGCTGTTCAGAGTTCTTGGAGTAGTTGCTATGGGTCTTCAATCATCAACGTCTTTGTTTGCTCAGCTACTAAACTCCCTTTTTCGTGCCCCTATATCTTTTTATGACTCCACGCCATTGGGAAGGATCCTTAGTAGGGTCTCATCTGATCTGAGCATTGTTGATCTTGATGTCCCTTTCACTCTTATGTTCGCTGTTGGAGCCACTACAAATTTATATGCTAATCTTACAGTTCTGGCAGTTGTTACTTGGCAAGTCTTGTTTATCTCTATACCGATGGTTTATGTTGCACTTCTGTTGAAGAAATACTACTTTGCCTCTGCGAAACAGTTGATGAGGCTGAACGGCACAACAAAATCCTTTGTAGCCAATCATCTAGCAGAGTCTGTTGCTGGAGCTATGACAATAAGGGCTTTTGAGGAGGAAGAACGTTTCTTTGCCAGGAATCTTGAGTTAATCGATGTCAATGCTTCTCCTTTCTTCCATAATTTTGTGGCAAGTGAGTGGTTGATTCAACGTTTAGAAACAATCAGTGCAGTTGTTCTTGCCTCTGCAGCACTATGCATGGTAGTGCTTCCACCTGGGACTTTTACCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTAAATGTATCCCTTGTATTCTCTATTCAAAGAGAGTGCATAATAGCAAACTATATAATATCAGTAGAGAGGCTGAAACAATACATGCATATACCAAGTGAGGCTCCGGAAGTAATAGAAGGAAATCGCCCTCCTTTAAATTGGCCTGCAGTAGGTAAAGTAGAAATAGATAATTTGCAGATAAGATATAGGCCCGATACACCTCTTGTACTTCGAGGGATCACATGTACAATTGAAGGAGGGCACAAGATTGGCATTGTTGGCAGGACAGGCAGTGGAAAGTCTACCCTTATAGGTGCTTTGTTCCGCCTTGTGGAGCCGGCAGGTGGAAACATTATTGTTGATGGCATAGATATTTGTGCCATTGGACTCCATGATTTGAGGTCACGTTTTGGTATCATACCACAAGATCCCACTCTTTTTAATGGCACAGTTAGATATAACATGGACCCCTTGTCTCAACACTCTGACAAAGAGATATGGGAGGTTCTTGGAAAGTGTCAGTTGCGAGAGGCTGTTCAAGAGAAAGAAGGCGGTTTGGACTCCTCAGTTGTGGGAGATGGGTCAAACTGGAGCATGGGGCAACGACAGCTTTTCTGTTTGGGGCGTGCTCTTTTGAGGAGAAGTCGGATTTTGGTGCTCGATGAAGCAACTGCATCTATTGATAATGCTACTGATTTGATTCTGCAGAAAACTATAAGGAGTGAATTTGCTGATTGTACTGTGATGACAGTAGCACACAGGATACCAACTGTGATGGATTGCACCAAGGTTATCTCCATTAGTGATGGAAAATTGGTGGAGTATGATGAGCCAACAAACTTGATGAAGAGAGAAGACTCTCTGTTTGGACAGCTTGTGAAGGAATATTGGTCTCATCTTCCGTCTGCAGAATCACATTAA 4452 0.4196 MGDFWSVFCGESGCSEPGESPCSYGFEFLRDPSSCINHSLIICLDVLLLIMLIITAIKRSSPQTVHHHAQVQRFSKLQVASAIVNGCLGLVHLFLGVWVLEEKLRKTHTAFPIHLWFLEFSQGFTWLLVGLTTSLRLKDLSKPWLKLLSILFFLVSGVFCVISILYASSGREVSLKVALDIVSFPGAILLLVCSYKRSTYADTDGKIDESLYAPLNGHHSTDAGKTSSFNDVTPFATAGFFSKMTFWWLNPLMKRGKEKTLEDEDVPKLREEDQAQSCYLMFLDQLNRQKQREPSSQPSLLWTILLCHWKDILFSGFYALLKVLTISAGPVLLNSFILVAEGKGSYQYEGYVLAILLFLTKIIESVSQRQWYFLSRLTGLKVRSFLTAAIYKKQLRISNASKLVHSSGEIMNYVTVDAYRIGEFPFWFHQIWTTSLQLCIALIVLFRAVGLATFAALAVIVLTVLCNTPLAKLQHKYQTKLMVAQDERLKASSEALVNMKVLKLYAWETHFKRAIECLRKVELKCLSALQLRKAYITFLFWSSPVMVSAASFGACYFLKIPLHANNVFTFVASLRLVQDPIRTMADVIGMLIQAKVAYTRIVKFLEAPELLNANVKKRNLGDRLKGSILINSADFSWEGNASKPTLRNINLVVKPGQKVAICGEVGSGKSTLLAAILGEVPNTRGTIEVHGKFAYVSQTAWIQTGTVRENILFGSTMDSQRYQETLERSSLVKDLELFPHGDFTEIGERGVNLSGGQKQRIQLARALYQNADIYVLDDPFSAVDAHTATNLFNEYVMDALQGKTVLLVTHQVDFLPAFDSILLMSDGEIRQAASYDYLLASSQEFQDLVNAHKETAGSERLVNVTSAQAGPSSAKEIIKSYVEKEFKASNGDQLIKQEERETGDNGLKPYFQYLNQRRGYLYFSLAALSHLTFVIGQVLQNSWMAANVDNPHVSTLRLISVYLLIGVGSTIFLLFRVLGVVAMGLQSSTSLFAQLLNSLFRAPISFYDSTPLGRILSRVSSDLSIVDLDVPFTLMFAVGATTNLYANLTVLAVVTWQVLFISIPMVYVALLLKKYYFASAKQLMRLNGTTKSFVANHLAESVAGAMTIRAFEEEERFFARNLELIDVNASPFFHNFVASEWLIQRLETISAVVLASAALCMVVLPPGTFTSGFIGMALSYGLSLNVSLVFSIQRECIIANYIISVERLKQYMHIPSEAPEVIEGNRPPLNWPAVGKVEIDNLQIRYRPDTPLVLRGITCTIEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGNIIVDGIDICAIGLHDLRSRFGIIPQDPTLFNGTVRYNMDPLSQHSDKEIWEVLGKCQLREAVQEKEGGLDSSVVGDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRSEFADCTVMTVAHRIPTVMDCTKVISISDGKLVEYDEPTNLMKREDSLFGQLVKEYWSHLPSAESH 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3347g00001 1483 FunFam ABC transporter C family member 3 1220 1472 - -
Pral3347g00001 1483 ProSitePatterns ABC transporters family signature. 753 767 IPR017871 GO:0005524|GO:0016887
Pral3347g00001 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1471 IPR003439 GO:0005524
Pral3347g00001 1483 FunFam ABC transporter C family member 10 296 609 - -
Pral3347g00001 1483 Pfam ABC transporter 646 780 IPR003439 GO:0005524
Pral3347g00001 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 851 IPR003439 GO:0005524
Pral3347g00001 1483 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 235 1471 - -
Pral3347g00001 1483 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 313 593 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3347g00001 1483 FunFam ABC transporter C family member 5 886 1218 - -
Pral3347g00001 1483 SMART AAA_5 1263 1446 IPR003593 GO:0016887
Pral3347g00001 1483 SMART AAA_5 655 828 IPR003593 GO:0016887
Pral3347g00001 1483 Gene3D - 1221 1472 IPR027417 -
Pral3347g00001 1483 CDD ABC_6TM_ABCC_D2 919 1212 IPR044726 GO:0140359
Pral3347g00001 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 851 IPR027417 -
Pral3347g00001 1483 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1188 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3347g00001 1483 Pfam ABC transporter transmembrane region 921 1161 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3347g00001 1483 Pfam ABC transporter transmembrane region 313 579 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3347g00001 1483 SUPERFAMILY ABC transporter transmembrane region 301 606 IPR036640 GO:0005524|GO:0016020
Pral3347g00001 1483 Gene3D - 605 868 IPR027417 -
Pral3347g00001 1483 CDD ABCC_MRP_domain1 628 828 - -
Pral3347g00001 1483 Gene3D ABC transporter type 1, transmembrane domain 284 604 IPR036640 GO:0005524|GO:0016020
Pral3347g00001 1483 Gene3D ABC transporter type 1, transmembrane domain 884 1218 IPR036640 GO:0005524|GO:0016020
Pral3347g00001 1483 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
Pral3347g00001 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1469 IPR027417 -
Pral3347g00001 1483 CDD ABCC_MRP_domain2 1235 1455 - -
Pral3347g00001 1483 FunFam ABC transporter C family member 10 611 864 - -
Pral3347g00001 1483 SUPERFAMILY ABC transporter transmembrane region 910 1217 IPR036640 GO:0005524|GO:0016020
Pral3347g00001 1483 CDD ABC_6TM_ABCC_D1 314 601 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3347g00001 Pral-Chr3347 3025 11507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3347g00001 622 1471 Calmodulin-binding Proteins AT2G36910 23.983 1.14e-53 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3347g00001 K05666 - gmx:100811468 2325.44