LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3341g00022	ATGAGCTTCTTCCCGTGCATCGCTTGTAGCGATGAATCCTTTTCGTTGCCAGCTCCAAAGCAGTTGGGTTATGGCCCTCCTGAGGATTTGTTCGGCCTCGATATGGAACCCAAGCGGAGCAATGGCAGCTCTCAAATATCGGAGCCCAGGTCATGGTTTGGTCCAAATGGACAGTACATCAAAGAGTTACCTTGCCCAAGCTGCCGGGGAAGGGGCTATACTCCTTGTACAGAGTGTGGTATTGAAAGATCAAGATCAGACTGTCCAAAGTGTAGTGGGAAGGGTATTGTTACTTGCCACCAGTGTTCTGGAGCTCGTGTTACTTGGGAAGAGTCAATTGATGAAAGACCATGGGAAAGAGCACGTTCCATTTCCCCACTCAAAGTAAAGGAAGATGATGAAGTTGATAATTTAGACATAAAGCTGGATGTGAAGAAAAAATCAAAGCGGATTTACCAATCACCGTCTCCTGAAGTTGGATTAAAGATTAGTCGCTCATTAAAAGATCTCAATGCAAAAACTGGTCTGTTTAGCAAGAGAATGAAGATTATCCATCGTGATCCCATGCTTCATGCACAAAGAGTGGCTGCAATTAAGAAATCCAAGGGAACTGATGCAGCTAGAAAGCGCACCTCTGAAACTATGAAAGCTTTCTTTAGTAACCCAGAAAATCGCCATAAAAGGAGCATTGCCATGAGAGGAGTGAATTTCTTCTGCCAAAACTGTGGAAGGGAAGGGCATAGGAGACACTACTGTCCAGAACTGAAGGGTAGTTTGGTGGATCGGCAATTCACGTGCCAGCTATGTGGGGAAAAAGGCCATAACAGAAGAACATGCAGCAAGTTAAGGATAGGCCATCGGAACGGCAGAACTGTAAAACTTCATCGCTGTAAAATATGTCGTCGATATGGCCATAATCGCAGGACCTGCCCTCAGTTAGTTGGTACATCCAAAACGACAGCTTCTCCAAGACCATACAAGTGTTGTTTGTGCCGCAAGAAGGGACATAATATCAGGACATGTCCTACAAGGGCTATTAGTGTTAAACAACATGCTCAAGATTAA	1065	0.4479	MSFFPCIACSDESFSLPAPKQLGYGPPEDLFGLDMEPKRSNGSSQISEPRSWFGPNGQYIKELPCPSCRGRGYTPCTECGIERSRSDCPKCSGKGIVTCHQCSGARVTWEESIDERPWERARSISPLKVKEDDEVDNLDIKLDVKKKSKRIYQSPSPEVGLKISRSLKDLNAKTGLFSKRMKIIHRDPMLHAQRVAAIKKSKGTDAARKRTSETMKAFFSNPENRHKRSIAMRGVNFFCQNCGREGHRRHYCPELKGSLVDRQFTCQLCGEKGHNRRTCSKLRIGHRNGRTVKLHRCKICRRYGHNRRTCPQLVGTSKTTASPRPYKCCLCRKKGHNIRTCPTRAISVKQHAQD	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3341g00022	354	Gene3D	-	41	109	-	-
	Pral3341g00022	354	SUPERFAMILY	Retrovirus zinc finger-like domains	236	282	IPR036875	GO:0003676\|GO:0008270
	Pral3341g00022	354	SMART	c2hcfinal6	265	281	IPR001878	GO:0003676\|GO:0008270
	Pral3341g00022	354	SMART	c2hcfinal6	327	343	IPR001878	GO:0003676\|GO:0008270
	Pral3341g00022	354	SMART	c2hcfinal6	238	254	IPR001878	GO:0003676\|GO:0008270
	Pral3341g00022	354	SMART	c2hcfinal6	296	312	IPR001878	GO:0003676\|GO:0008270
	Pral3341g00022	354	Gene3D	-	291	353	-	-
	Pral3341g00022	354	SUPERFAMILY	DnaJ/Hsp40 cysteine-rich domain	63	108	IPR036410	-
	Pral3341g00022	354	ProSiteProfiles	Zinc finger CCHC-type profile.	239	254	IPR001878	GO:0003676\|GO:0008270
	Pral3341g00022	354	Gene3D	-	235	282	-	-
	Pral3341g00022	354	SUPERFAMILY	Retrovirus zinc finger-like domains	289	345	IPR036875	GO:0003676\|GO:0008270
	Pral3341g00022	354	PANTHER	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	37	280	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3341g00022	Pral-Chr3341	1014476	1019780	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3341g00022	20	347	C2H2 Transcription Factor Family	AT5G20220	63.798	1.43e-155	441

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3341g00022	-		-	gmx:100800156	557.37