Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3336g00005 ATGGAATCTGGAGGTTTCCATGGCTATCGCAAGCTCCCTAACACTTCTTCTCCAGGGTTGAAGCTATCTTCGTCGGCGTCATTACCGGAGACGATGAACAATAACAACAACAACAACCACTCATCGTCCTCTTCCACCGCCGTAGACGACAGTGAATGCATCGTGAGGGAGCAAGACAGGTTCATGCCGATCGCCAACGTCATCAGAATCATGCGCAAGATCCTCCCTCCACACGCCAAGATCTCCGACGACGCCAAGGAGACCATCCAGGAATGCGTGTCGGAGTACATAAGCTTCATCACCGGCGAGGCCAACGAGCGGTGCCAGAGGGAGCAGCGGAAGACGATCACCGCCGAGGACGTGCTGTGGGCCATGAGCAAGCTTGGTTTCGATGACTACATTGAGCCCCTCACCATGTACCTTCATCGGTACCGCGAGATGGAGGGTGACCGGGCCTCCATGCGTGGCGAGCCGCTTGGCAAGCGGACGGTGGAGCCACCATATGGGGCACCAGGGTTAGGTGCTTTTGTGCCGCCGTTTCACATGGGGCATCCCAATGGCTACTTTGGAACCATGGGAGGGTACATGAGAGAGCATGGGCAGAATAATAACGGAGGAGGAGGGTCTTCCTCGCAAGCTGAACCAAATGGTCAATACAAGTGA 663 0.5566 MESGGFHGYRKLPNTSSPGLKLSSSASLPETMNNNNNNNHSSSSSTAVDDSECIVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMEGDRASMRGEPLGKRTVEPPYGAPGLGAFVPPFHMGHPNGYFGTMGGYMREHGQNNNGGGGSSSQAEPNGQYK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3336g00005 220 MobiDBLite consensus disorder prediction 193 220 - -
Pral3336g00005 220 SUPERFAMILY Histone-fold 58 158 IPR009072 GO:0046982
Pral3336g00005 220 MobiDBLite consensus disorder prediction 16 50 - -
Pral3336g00005 220 FunFam Nuclear transcription factor Y subunit B-6 50 165 - -
Pral3336g00005 220 Gene3D Histone, subunit A 51 165 IPR009072 GO:0046982
Pral3336g00005 220 MobiDBLite consensus disorder prediction 1 50 - -
Pral3336g00005 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 194 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pral3336g00005 220 ProSitePatterns NF-YB/HAP3 subunit signature. 92 108 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pral3336g00005 220 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Pral3336g00005 220 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Pral3336g00005 220 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Pral3336g00005 220 MobiDBLite consensus disorder prediction 202 220 - -
Pral3336g00005 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 61 125 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3336g00005 Pral-Chr3336 280640 284958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3336g00005 1 188 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.577 3.02e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pral3336g00005 CBFD_NFYB_HMF 6.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3336g00005 K08065 - tcc:18597346 293.508