Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3318g00038 ATGAACAACAATCTGGTATTTCTTGCAAGAACTCTTGCAACAAGATTTCACAGCCCATCTACATTGCGATTCTTTTGTTCATCATCCTCAGAGTCGTCTCCTCCTTCCAGCAACAGACTCTTTGTTGGAGGGTTGTCATGGTCAGTGGATGAGAAGTCTCTCAAAGATGCTTTCTCTTCATTTGGTGAAGTCACTGAAGTGAGGATAGCATATGATAAAGACAGTGGTAGGTCTAGAGGGTTTGGATTTGTCATATTTTCGGATGAAGATAAAGCCAAAACTGCAAAAGACGCAATGGATGGCAAGGCACTCTTAGGAAGACCGTTGAGAATAAATTTTGCTCTTGAGAAGGTCCGTGGGGGACCTGTTGTAGTTCCTCGGATCTCAGATATTGGACACATAAATAGGCGCGGCACTTCATCTAAAACCGGATAA 435 0.4299 MNNNLVFLARTLATRFHSPSTLRFFCSSSSESSPPSSNRLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIAYDKDSGRSRGFGFVIFSDEDKAKTAKDAMDGKALLGRPLRINFALEKVRGGPVVVPRISDIGHINRRGTSSKTG 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3318g00038 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Pral3318g00038 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 110 IPR000504 GO:0003723
Pral3318g00038 144 Gene3D - 26 142 IPR012677 -
Pral3318g00038 144 SMART rrm1_1 39 112 IPR000504 GO:0003723
Pral3318g00038 144 SUPERFAMILY RNA-binding domain, RBD 29 127 IPR035979 GO:0003676
Pral3318g00038 144 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 118 - -
Pral3318g00038 144 CDD RRM2_NsCP33_like 39 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3318g00038 Pral-Chr3318 753640 756911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3318g00038 36 117 C2H2 Transcription Factor Family AT2G19380 36.585 6.72e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3318g00038 - - cave:132182736 202.216