Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral330g00005 ATGTCAGAGGAAGCGATGAAACATCAGTACATCACTGATGACTTGAAAAGAAAAGCATCATTCAAGAAAAGGGAAGCAATTATCATGAAAAAGATAAGTGAACTTAGCATCCTTTGTGGAGTTGAGGCTGGGGCAATCATTTACAGTGGTCGCTCTGATCCTCAACCAGAGGTTTGGCCGGACCATGAAGGTGTCCAGCAAGTGATTGAGAGGTGCCGAGGCGGACCTGTCTCGGAGAGGGCCTTGAACAAAGAGGCAACAATTCAGAAGAGGATTAAAAAAGGGAAAGAACTTCTGATGAGAAGGAGAAAAGAGAATCGTACAGAAGAGATTTCCCAACTCATGATACGTTGTATGTTAGGGAAAGCAACGCCCAGCCCTGCAGATTGGCATGATATGAAGATGGTAGTTGAGCAGACTTTGAAGAAAATTAACTCTTGA 441 0.4376 MSEEAMKHQYITDDLKRKASFKKREAIIMKKISELSILCGVEAGAIIYSGRSDPQPEVWPDHEGVQQVIERCRGGPVSERALNKEATIQKRIKKGKELLMRRRKENRTEEISQLMIRCMLGKATPSPADWHDMKMVVEQTLKKINS 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral330g00005 146 SUPERFAMILY SRF-like 6 90 IPR036879 GO:0003677|GO:0046983
Pral330g00005 146 CDD MADS_SRF_like 9 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pral330g00005 146 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Pral330g00005 146 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pral330g00005 146 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Pral330g00005 146 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Pral330g00005 146 PANTHER MADS BOX PROTEIN 8 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral330g00005 Pral-Chr330 29469 29909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral330g00005 1 145 Type I MADS-box Gene Family AT5G48670 39.735 3.61e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral330g00005 SRF-TF 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral330g00005 - - pcin:129319512 184.496