Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3309g00033 ATGGACATGCCTTCTTCTTCAAGAAGCTCTGCTACGACCTCCCATGGCGCTTCATCTTCTCCTTACAGGGGCGTTCGAAAGAGGAAGTGGGGCAAATGGGTGTCTGAAATCCGTGAGCCAGGCACCAAAACCAGAATTTGGCTTGGAAGCTTCGAGACATCGGAGATGGCCGCGACAGCCTACGACGTTGCCGCTCTTCACTTCCGAGGTCGTGATGCCAGGCTCAACTTCCCGGAGCTCGCCACAAGCCTTCCCCGTCCGGCGACCAATAATGCCGACGACATTCGCATGGCCGCACATGAGGCTGCTTTGAGGCTGAGGACCAATCCAGCAGCAGAAGGGGACGTGGTCGACCCATCTGCCGGTGCCGTCGGCATCCGTGGTGGGGTGGCGCCAGCCACCGTGAGGCTGTCACCGACACAGATTCAGGCGATCAATGAGTCGCCATTGGACTCACCGAAGATGTGGATGCAAATGTCTGAGACACTGATGCTGGATGAACAGTATCCGACGACGTTTGGGGAAAATGATGATGAGACATGGGAGAATATGCAGAGTGATTCTCTTTGGGGTCCTTAA 579 0.5596 MDMPSSSRSSATTSHGASSSPYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETSEMAATAYDVAALHFRGRDARLNFPELATSLPRPATNNADDIRMAAHEAALRLRTNPAAEGDVVDPSAGAVGIRGGVAPATVRLSPTQIQAINESPLDSPKMWMQMSETLMLDEQYPTTFGENDDETWENMQSDSLWGP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3309g00033 192 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Pral3309g00033 192 Pfam AP2 domain 22 70 IPR001471 GO:0003700|GO:0006355
Pral3309g00033 192 MobiDBLite consensus disorder prediction 1 20 - -
Pral3309g00033 192 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Pral3309g00033 192 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Pral3309g00033 192 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Pral3309g00033 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 135 - -
Pral3309g00033 192 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Pral3309g00033 192 MobiDBLite consensus disorder prediction 1 28 - -
Pral3309g00033 192 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Pral3309g00033 192 MobiDBLite consensus disorder prediction 171 192 - -
Pral3309g00033 192 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Pral3309g00033 192 FunFam Ethylene-responsive transcription factor 2 20 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3309g00033 Pral-Chr3309 1138902 1139480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3309g00033 20 192 AP2-EREBP Transcription Factor Family AT1G71450 62.500 1.38e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral3309g00033 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3309g00033 - - gmx:100815719 255.758