Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3309g00012 ATGGGACGTTCGCCTTGTTGCGAGAAAGCCCACACAAACAAAGGCGCTTGGACCAAAGAGGAAGACCAACACCTTATCGATTATATTCGCCTCCATGGCGAAGGCTCTTGGCGTTCTCTCCCAAAAGCCGCTGGGTTGCTCAGATGCGGAAAGAGTTGCAGATTGAGATGGATGAACTACCTTCGTCCTGATCTCAAACGTGGAAATTTCACCCAAGAAGAAGACGACCTCATCATCAAGCTTCATAGTCTACTAGGAAACAAATGGTCTCTGATTGCGGCGCGATTACCAGGTAGAACCGACAATGAGATTAAGAATTATTGGAATACTCATATAAAGCGCAAGCTTATTAGCCGCGGGATCAATCCCCAAACGCACCGTCCTCTCAACGAAACCACCGCCTCTGTAAAATCTACCGCCGAGTGGGACTTCGAGAACTCACCGGCGGCCGAAAACGACTTCCTCGGGAAGAATCAGAAGCAGAAGCGGGAGAGTGATAGTTTCAATTGCATCGATTTCGGCAGTATGAAGGCGGTTGAGGAGTTGAACAACACTAGTAGCGGCATCACTACAGAGGAAGAAGAACCGCCATTGCTAGAGCGAGATTCTTCGTTTCATTGTGCTGAAATTGAGCCCAATCTGGAGCTCTCAATTGGTCTCCTGCCTTTTCACTCCGGATCGGCTCGTACGAATATCGGGTTGGTGCGGTCGCCGGCGACGGTGGCTCAAACGGCGGCGTGTCGGAGTCGGCAATTCGATTTTCAGAGGTGGGGAAGTGTATAG 783 0.5032 MGRSPCCEKAHTNKGAWTKEEDQHLIDYIRLHGEGSWRSLPKAAGLLRCGKSCRLRWMNYLRPDLKRGNFTQEEDDLIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLISRGINPQTHRPLNETTASVKSTAEWDFENSPAAENDFLGKNQKQKRESDSFNCIDFGSMKAVEELNNTSSGITTEEEEPPLLERDSSFHCAEIEPNLELSIGLLPFHSGSARTNIGLVRSPATVAQTAACRSRQFDFQRWGSV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3309g00012 260 CDD SANT 69 112 IPR001005 -
Pral3309g00012 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral3309g00012 260 CDD SANT 16 61 IPR001005 -
Pral3309g00012 260 FunFam Myb transcription factor 68 137 - -
Pral3309g00012 260 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral3309g00012 260 FunFam Myb transcription factor 11 67 - -
Pral3309g00012 260 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 178 - -
Pral3309g00012 260 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral3309g00012 260 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral3309g00012 260 Gene3D - 7 67 - -
Pral3309g00012 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral3309g00012 260 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral3309g00012 260 SMART sant 13 63 IPR001005 -
Pral3309g00012 260 SMART sant 66 114 IPR001005 -
Pral3309g00012 260 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Pral3309g00012 260 Gene3D - 68 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3309g00012 Pral-Chr3309 347148 348470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3309g00012 1 229 MYB Transcription Factor Family AT4G09460 62.009 3.60e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3309g00012 Myb_DNA-binding 9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3309g00012 K09422 - jre:109006329 308.916