Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3301g00047 ATGAATCTAGATGAACAAGACGCTCCAGCTTCTTTAGCAGCATGTCCAAGGACTAAGCTTCCGGCGAGTGACGATACTTTTGCGGCTGGAAGCCCGTTTGAATCCCTGGATTCTGCATATTCCATTCAAGCTCGACTTTCTAATGACTGTTCTCGATGTGTTTCTGATCGAGGCTTCTGCAGACTCGACGCCAAAGCACAGTTTTATTGTTCCAAATCCAAAGTTGCAGAAAATCCACCGCCGGTGGGAGAAAATTCACGGTCTGGCAAGATGAGACTTATAATAGGTTTAACAAGTGGAGCAATTGGGACAGTGCTAATATGTATGATTATTTTTTGTTGTATAATCAAATCACTGAGGCAGAAAATAGAGTTCTTGAAGACATCTAGGGCTGACCAAAATATCGAGGCCTTCATTAGAAACCACGGACCTCTAGCTCTCACAAGATATAAATATGCGGAGGTGAAAAAAATGACCAAATCTTTCCAAGTTAAACTGGGACAAGGTGGTTATGGCGCTGTATACAAAGGAGAACTACTCAATGGTTGCCCTGTTGCCATCAAGTTACTGAAGTCATCCAAAGGGAATGGGGAAGAATTTATCAATGAGGTTGCTAGCATTAGTAAAACTTCTCATGTAAATGTTGTTACCCTCCTAGGGTTCTGCTTGGAAGGTCGAAAAAAGGCTCTTATATATGAGTTTATGCCAAATGGATCTCTTGATAAATTCATTCGTAATACTGCAGATAGAACTAGTCCATCCTTAACTTGGGAGTATTTGTACGAAATTGCAATTGGGACAGCTCGAGGACTTGAATACTTGTACAAGGGATGCAACACTCGAATTCTACATTTTGATATAAAGCCACATAACATCCTTTTGGATGAAAGCTTTTGTCCCAAGATCTCAGATTTTGGGCTTGCAAAGTTGTGTCCAAGGAAAGAAAGCATAGTTTCAATTTCAGAAGCTCGAGGAACTATAGGATATCTTGCTCCAGAAGTTTGGAATAGAAATATAGGAAGAGTTTCGCATAAGTCTGACATTTTTAGTTATGGAATGCTGTTGTTAGATATGGTTGGTGAGAGAAAGAATTTGAATCCTGAAGACTGTACAACCGAGACTTATTTTCCAGATTGGATTTATGATAAACTTGAGAAAGGAAGCAAGTTGGGACAGGATGATGGGGCGAACCCCATGGAGGAAAATGACATTGCAAAGAAATTGACCATTGTGGGTTTATGGTGTATTCAAACATTTCCGACTCAAAGACCAACAATTAGTAGAGTTATTGAAATGTTAGAGGGAAGTTTAGACTCTCTGGAAATGCCACCGAAGCCAGTCATGCTCTCCCCTCCAAGATTAGAACTAGAATCTTCTGCAACTTGCAATACCAAGTCAGAACAAGTTGATTCTGCAGAAAGCTCTTCCCAAAGGTTGGAGACCCACTAG 1449 0.4058 MNLDEQDAPASLAACPRTKLPASDDTFAAGSPFESLDSAYSIQARLSNDCSRCVSDRGFCRLDAKAQFYCSKSKVAENPPPVGENSRSGKMRLIIGLTSGAIGTVLICMIIFCCIIKSLRQKIEFLKTSRADQNIEAFIRNHGPLALTRYKYAEVKKMTKSFQVKLGQGGYGAVYKGELLNGCPVAIKLLKSSKGNGEEFINEVASISKTSHVNVVTLLGFCLEGRKKALIYEFMPNGSLDKFIRNTADRTSPSLTWEYLYEIAIGTARGLEYLYKGCNTRILHFDIKPHNILLDESFCPKISDFGLAKLCPRKESIVSISEARGTIGYLAPEVWNRNIGRVSHKSDIFSYGMLLLDMVGERKNLNPEDCTTETYFPDWIYDKLEKGSKLGQDDGANPMEENDIAKKLTIVGLWCIQTFPTQRPTISRVIEMLEGSLDSLEMPPKPVMLSPPRLELESSATCNTKSEQVDSAESSSQRLETH 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3301g00047 482 SMART serkin_6 160 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3301g00047 482 Gene3D Transferase(Phosphotransferase) domain 1 235 442 - -
Pral3301g00047 482 FunFam serine/threonine-protein kinase PBS1-like 128 234 - -
Pral3301g00047 482 Gene3D Phosphorylase Kinase; domain 1 136 234 - -
Pral3301g00047 482 FunFam PR5-like receptor kinase 235 445 - -
Pral3301g00047 482 MobiDBLite consensus disorder prediction 440 482 - -
Pral3301g00047 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Pral3301g00047 482 ProSitePatterns Protein kinases ATP-binding region signature. 166 188 IPR017441 GO:0005524
Pral3301g00047 482 Pfam Protein tyrosine and serine/threonine kinase 162 433 IPR001245 GO:0004672|GO:0006468
Pral3301g00047 482 SUPERFAMILY Protein kinase-like (PK-like) 143 434 IPR011009 -
Pral3301g00047 482 ProSiteProfiles Protein kinase domain profile. 160 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3301g00047 482 MobiDBLite consensus disorder prediction 456 476 - -
Pral3301g00047 482 Coils Coil 116 136 - -
Pral3301g00047 482 PANTHER RUST RESISTANCE KINASE LR10-RELATED 130 459 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3301g00047 Pral-Chr3301 389569 392254 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3301g00047 17 461 Receptor kinase-like Gene Family AT1G66910 47.903 1.33e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pral3301g00047 PK_Tyr_Ser-Thr 9.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3301g00047 - - pcin:129304394 673.315