Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3301g00042 ATGAATGAATGTTTTGTGCTTAACCGGCAAAGCGTTTATGATGAGTGCGAGGATTCTGAAGGGTTGCGTGGCTACAATAATGCTGAAAATGAGCTCATGTGTTTCTGCAAGGATGGCAGCGGACAAAGCAATGGCTGCTCAGTCTGTCCCCCCTCCAGCTGTGCCGACGGTTTGCAAATCAGATACCCTTTCTGGCTATCAGATTCACATGGTTCCCCTCCTAACCACTACTGTGGTTATGAGGAATTTGGGCTCATCTGCTCTCATCAAGGTGGCTACCCCATCTGGTCTCCACCACCTGGGTTACGTTATCGTGTCGCGCACGTAGACTATGATAATCATACCATTCACCTTATTGACGTTGACACTTTCAACCGAACATGTCCAAGGGCACTTCACAAGGTTCCCCTGGGAAATTTGCCCCTTTCTCATTCCCCTTTGAATTTGAACCTTAGCTTTCACTACAATTGCAATTCTCACCCATCTAATGCGTCGCCCATAAGGTGTTTGACGTCTGGTGTGAAGCAGTCCTTTGTGTTTGTGATGGGGAACGAGAGTAATGAGGGTTTTGATTGGTCCAAGACTTGTGAAGAGAGTGTTGTGGTGCCAGTGATGAAGGATCGGGTTACAAGTAAAGGGTTGATGAATGAGTATAAAGAGGCTATGAACGAAGGGTTTCTTCTTAATTGGCAGACTGCCCAGAGTTGTGAAGAGTGTGAAGCTTCTGACGGGATTTGTGGCTACATTGATACCAGAAAAGAGTCGTTGTGCTTCTGCAAGGATGGCAACGTGCAAAGCAATAGCTGCTCAGGTTTAATAGCTGCAGGAGTGGGAGCTCTGCTGATATGCATCATTTTCTTCTTCTCAAGACGAAAAATATCAGTAATGATCGCAGTATATTTTCAGAAGATGAAAAAGAACGATGAAGCCATTGAGTCCTTCATCAGAAATAATGGGCCTCTAACTATAACAAGGTACACATTTTCAGAAATCAAGAAAATGACCAACTCTTTTGAAGTCAAATTGGGAGAAGGAGGTTATGGCACTGTATTCAAAGGAAGCACACTACACAGCTGTCCTGTGGCTGTGAAGGTGTTGAATGCATCCAAAGGGAACGGTGAAGAGTTTATCAATGAGGTTGTGAGCATTAGTAGGACTTCACATGTAAATATTGTCACCCTCCTTGGTTTTTGTGTTGAAGGCAGCAAAAAAGCACTTGTATACGAACTTCTGCCCAATGGTTCACTTGAGAAGTTCATATGCAAGAGGGATTTAGAGCCAAATGATCCACCCTTGAGCTGGGAAAAATTACTTCAAATTGCAGAAGGGATAGCCAAAGGACTCGAGTATTTGCATAGGGGTTGCAACACTCGAATCTTGCATTTTGATATAAAACCTAACAATATCCTTTTGGATAAAAACTTGTGTCCAAAGATCTCAGATTTTGGGCTGGCTAAACTCTGTTCTAAAACACGTAGTATTGTCTCAATGCTTGATGCAAGAGGAACTGCCGGGTATATTGCACCAGAAGTATGGAATAGAAACTTTGGAGGAGTCTCTCATAAGTCAGATGTGTATAGTTATGGAATGTTGATTTTGGAAATGGTTGGAGGAAGACAAAATATCAACAGAGACATAAATGATTCAAGTGATGCATGTTTTCCTTATTTGGTATACAAGCAAATTGAGATGGACAAGAATATAACAGAACATGATGGCATGACCAGAGAGGAAAGTGAAATTGCAAAGAAGATGGTCATGGTGGGATTATGGTGCGTCCAGACAATGCCATCAGAAAGGCCTCCCATGAATAGAGTGATTGAGATGTTGGAAGGGAGCTTGGATCAGCTCTCAACGCCACCAAAGCCTTTCATGTTTGCCCCTATAATTCCAGCAACCGGAGAGGGAAATTGCGCTACAAATGGTGTTCTTTCCTTTTCGGTGGATTATCAATGGGGTAGATAG 1965 0.4305 MNECFVLNRQSVYDECEDSEGLRGYNNAENELMCFCKDGSGQSNGCSVCPPSSCADGLQIRYPFWLSDSHGSPPNHYCGYEEFGLICSHQGGYPIWSPPPGLRYRVAHVDYDNHTIHLIDVDTFNRTCPRALHKVPLGNLPLSHSPLNLNLSFHYNCNSHPSNASPIRCLTSGVKQSFVFVMGNESNEGFDWSKTCEESVVVPVMKDRVTSKGLMNEYKEAMNEGFLLNWQTAQSCEECEASDGICGYIDTRKESLCFCKDGNVQSNSCSGLIAAGVGALLICIIFFFSRRKISVMIAVYFQKMKKNDEAIESFIRNNGPLTITRYTFSEIKKMTNSFEVKLGEGGYGTVFKGSTLHSCPVAVKVLNASKGNGEEFINEVVSISRTSHVNIVTLLGFCVEGSKKALVYELLPNGSLEKFICKRDLEPNDPPLSWEKLLQIAEGIAKGLEYLHRGCNTRILHFDIKPNNILLDKNLCPKISDFGLAKLCSKTRSIVSMLDARGTAGYIAPEVWNRNFGGVSHKSDVYSYGMLILEMVGGRQNINRDINDSSDACFPYLVYKQIEMDKNITEHDGMTREESEIAKKMVMVGLWCVQTMPSERPPMNRVIEMLEGSLDQLSTPPKPFMFAPIIPATGEGNCATNGVLSFSVDYQWGR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3301g00042 654 Pfam Wall-associated receptor kinase C-terminal 172 262 IPR032872 -
Pral3301g00042 654 FunFam PR5-like receptor kinase 411 621 - -
Pral3301g00042 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Pral3301g00042 654 SMART serkin_6 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3301g00042 654 Pfam Wall-associated receptor kinase galacturonan-binding 49 120 IPR025287 GO:0030247
Pral3301g00042 654 Pfam Protein tyrosine and serine/threonine kinase 339 610 IPR001245 GO:0004672|GO:0006468
Pral3301g00042 654 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Pral3301g00042 654 Gene3D Phosphorylase Kinase; domain 1 311 410 - -
Pral3301g00042 654 SUPERFAMILY Protein kinase-like (PK-like) 316 611 IPR011009 -
Pral3301g00042 654 ProSiteProfiles Protein kinase domain profile. 336 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3301g00042 654 PANTHER RUST RESISTANCE KINASE LR10-RELATED 307 627 IPR045874 GO:0004672
Pral3301g00042 654 Gene3D Transferase(Phosphotransferase) domain 1 411 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3301g00042 Pral-Chr3301 334142 344069 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3301g00042 50 623 Receptor kinase-like Gene Family AT5G38260 40.864 1.27e-134 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pral3301g00042 PK_Tyr_Ser-Thr 4.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3301g00042 - - gmx:100781977 768.844