Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3301g00029 ATGGCTGAATTCACAACAGATTTTCAAAGTTTTAGACCCTCCTTTCCTTTCTTAGACGTTGATCCAAACTTGGAACTTATAAACCAGTTCACAGGCATGATGAGCCCCCTTGTCCTGGACAACTCTAATCTCAATGTCCAGAGCTTGATTCCCTTCTCTCAAGAACCTGATTTTCCAGAAAATTTCCCCGTTTTACCGGCAGAAAATGAAATCCAGGATAGTCAAAAGAGGAAAGCGATGGATGTTACGGAAACCAGTTCTGTAAGTCCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAGAGTTCTGGAAGAGGTAAGAGAACAAAGAGCAATGTAGCAGAAGAAGGTAAACCAAAGGAAGTGGTTCATGTCAGGGCCAGAAGAGGTCAAGCTACAGACAGTCACAGTTTAGCAGAAAGGGTCAGAAGGGGGAAAATCAACGAAAAAATAAGACGCTTGCAGACCATTGTCCCAGGATGCTACAAGACCATGGGTATGGCGGTGATGTTGGACGAGATTATAAACTATGTCCAGTCCTTGCAGCATCAGGTGGAGTTTCTATCTATGAAGCTGACTGCGGCAAGCACCTTCTACGATTTCAATTCAGAGACAGACGCTATAGAAGCAATGCAGAGAGCAAGGGCATTCAAGGCAAAAGGATTATCCTCAAGAAATGATAGTGAAGAAGGATATGGCGGAGGGGTTTCTTGCTTTCATCCAACTTGGCCTCTCTAG 735 0.4435 MAEFTTDFQSFRPSFPFLDVDPNLELINQFTGMMSPLVLDNSNLNVQSLIPFSQEPDFPENFPVLPAENEIQDSQKRKAMDVTETSSVSPTPAVSESGSKSSGRGKRTKSNVAEEGKPKEVVHVRARRGQATDSHSLAERVRRGKINEKIRRLQTIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNSETDAIEAMQRARAFKAKGLSSRNDSEEGYGGGVSCFHPTWPL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3301g00029 244 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 74 204 IPR024097 GO:0006355
Pral3301g00029 244 MobiDBLite consensus disorder prediction 71 119 - -
Pral3301g00029 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 198 IPR036638 GO:0046983
Pral3301g00029 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 180 IPR011598 GO:0046983
Pral3301g00029 244 MobiDBLite consensus disorder prediction 81 106 - -
Pral3301g00029 244 CDD bHLH_AtBPE_like 120 205 - -
Pral3301g00029 244 Gene3D - 127 198 IPR036638 GO:0046983
Pral3301g00029 244 SMART finulus 136 186 IPR011598 GO:0046983
Pral3301g00029 244 Pfam Helix-loop-helix DNA-binding domain 134 181 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3301g00029 Pral-Chr3301 227455 228951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3301g00029 1 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 45.848 7.66e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3301g00029 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3301g00029 - - gmx:100806942 308.531