Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3301g00016 ATGGAGGAAAACAATCTGCCTCCTGGCTTCAGATTCCATCCCACAGATGAAGAACTCATAAACTATTATCTAACAAGTAAAGTTTCTGATGCTAATGGCTTCACTTCCAAAGCTATTGCAGTGGTTGATCTCAACAAGTCTGAACCCTGGGATCTTCCAGCTAAGGCTTCGATGGGAGAGAAGGTATGGTATTTCTTCAGCTTAAGAGACAGGAAATATCCAACCGGACTTCGAACCAACCGAGCCACAGAATCCGGCTACTGGAAAACCACCGGCAAAGACAAACATATCTTTCACGGCGGCGCATTGGTCGGCTTCAAGAAAACCCTCGTCTTCTACCACGGCAGAGCTCCTCGTGGCCTCAAAACCAATTGGGTTATGCATGAATATCGCCTCCACAATATGCCCCTTTTTGCACCTTCCAAGGAAGAATGGGTTGTTTGCAGGGTGTTCCAAAAGACCATATCGACAGCCAAAAAACCTCAGGAGATCACACCATCGTCCCCAGTATCTTTAGATTCATCACCTTGCAATAATGCAACCTCAATGGTGAATGAACTGGGTGACGACATCGAACTTCCTAATTTCAGCACTAGTCTTGCAAATTCCTCAACAGGATTCTCAAACAACATTGTACAACAAACTAATCCCAGCATTAATAATGGCGATTATTATCACAGCAATGTAAACACGAACATGAGCTTGAGCACAAATTGGTCGTCAGCTTCAACAGACCAATTTCCCTCTCTTCTTGCAGCTTCTCGAGGGTTAATGCTCAATCCCAATCTGTCGTCAGTGAACTCATTATTGCTTCTCAAAGCATTGCAGCTCAAGAGCTATCATGAGCAGCAGCAAGCTAATGATCACTTTGTTGCATCATCGTACATGTCTCAAGCAGTTTCCAACGTTGGAGGAACTGATCATGTTGTCTCAAATCCCAGTGCTTCTCATCATCAGCAGCAACCGTTCAATCTGGACTCCCTTTGGTGA 990 0.4465 MEENNLPPGFRFHPTDEELINYYLTSKVSDANGFTSKAIAVVDLNKSEPWDLPAKASMGEKVWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKHIFHGGALVGFKKTLVFYHGRAPRGLKTNWVMHEYRLHNMPLFAPSKEEWVVCRVFQKTISTAKKPQEITPSSPVSLDSSPCNNATSMVNELGDDIELPNFSTSLANSSTGFSNNIVQQTNPSINNGDYYHSNVNTNMSLSTNWSSASTDQFPSLLAASRGLMLNPNLSSVNSLLLLKALQLKSYHEQQQANDHFVASSYMSQAVSNVGGTDHVVSNPSASHHQQQPFNLDSLW 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3301g00016 329 Gene3D NAC domain 15 156 IPR036093 GO:0003677|GO:0006355
Pral3301g00016 329 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Pral3301g00016 329 ProSiteProfiles NAC domain profile. 6 153 IPR003441 GO:0003677|GO:0006355
Pral3301g00016 329 MobiDBLite consensus disorder prediction 306 329 - -
Pral3301g00016 329 SUPERFAMILY NAC domain 3 153 IPR036093 GO:0003677|GO:0006355
Pral3301g00016 329 FunFam NAC domain-containing protein 100-like 15 157 - -
Pral3301g00016 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3301g00016 Pral-Chr3301 170644 172861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3301g00016 3 329 NAC Transcription Factor Family AT3G18400 53.593 1.54e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral3301g00016 NAM 6.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3301g00016 - - gmx:100787111 360.147