Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3301g00010 ATGAAAGCAGCCAATGCATTGGGAGCTAAGACTGCAAGAGCTTGCGATAGCTGCCTTCGCCGGCGAGCTCGCTGGTTTTGCGCAGCCGATGACGCTTTCTTATGCCACGGCTGTGACAATCTGGTTCACTCCGCCAATCAGTTAGCCAGCAGACATGAAAGGGTTCGTCTTCAAACTGCATCGTCCTCCAAGAAGGCTACATCGCAAGTATGGTATAGTGGATTCACGCGCAAGGCAAGAACCCCGCGTCATAATAGCAAGCAGTTATCATCGGCTCAGCAAAAATCCAAGCATGAACAGGAGGAGGAGGAGGAAGAGGAAGCGATTTTTAATAGTACTCTTCCCGTCGTGCCGGAGCTTGGAAGCGAAGAAGGTGGGCTGGAGGAGAGTGAGGAGCAGTTGCTTTGCCGGGTTCCGGAGTTTGATCCGTTTGAAGATGAGCTTTGCAATATTTACAGTGAAGTTGGGGATGAGAGGTTGGACGTTGTGATGAAGAAAGATGATGTGAATGGTGGGGATGATGAAGGAACATGTGACTTGGACAATTTCTCGGAATTTCTTGCCTCGGATATGGATCTTGCAGACTTTGCTGCTGATGTTGAAAGCCTACTGGAAAGTGGGCTTGATGAATCTGCAGGAGCAGAACTATTGGACTGTAAACAAGAAGAAATGATGGAAGCAGTGGAGGGTACTGTGGGGTCATCATCGGACAAAAAAAATACTATGGTAAAGATTAAGGATGAACAAGTAGTGGAAGCTAACATGGTTGTAGGCATGACAAGTAAGGCCTTAAATTGGAACGCAACACAGACAATTCATCAGGGATCATCATCACCAGAAGAGGAAAAGACGGAGGAGACGAAGACAAAGATATTTTTGAGGCTAAACTACGAGGATGTCATTAGTGCTTGGGCAAGTCAAGGTTGTCCGTGGACAACAGGAAACCCACCTCAGTTCAACTCTACTGACTGCTGGCTACACTGCTTGGGTTCGAGCGGAGATGTTCATCAGTGCTGTTATGGGGAATTTGGGAGCTTAAGGGGCCATGTAGATGGAGGAAGAGAAGCAAGAGTATCGAGGTACAGAGAGAAGAGGAGAACACGTTTATTTGCGAAGAAGATAAGGTACGAAGTGAGGAAACTGAACGCAGAAAAAAGACCAAGAATGAAGGGTCGATTTGTAAAGAGGACGTCCTTCGTTGGAACCACTGCTTTGCCTACTGCTTCTCACTGA 1233 0.4728 MKAANALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASSSKKATSQVWYSGFTRKARTPRHNSKQLSSAQQKSKHEQEEEEEEEAIFNSTLPVVPELGSEEGGLEESEEQLLCRVPEFDPFEDELCNIYSEVGDERLDVVMKKDDVNGGDDEGTCDLDNFSEFLASDMDLADFAADVESLLESGLDESAGAELLDCKQEEMMEAVEGTVGSSSDKKNTMVKIKDEQVVEANMVVGMTSKALNWNATQTIHQGSSSPEEEKTEETKTKIFLRLNYEDVISAWASQGCPWTTGNPPQFNSTDCWLHCLGSSGDVHQCCYGEFGSLRGHVDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGTTALPTASH 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3301g00010 410 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Pral3301g00010 410 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 3 398 - -
Pral3301g00010 410 SMART bboxneu5 10 57 IPR000315 GO:0008270
Pral3301g00010 410 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Pral3301g00010 410 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Pral3301g00010 410 Pfam CCT motif 354 396 IPR010402 GO:0005515
Pral3301g00010 410 CDD Bbox1_BBX-like 14 57 - -
Pral3301g00010 410 MobiDBLite consensus disorder prediction 79 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3301g00010 Pral-Chr3301 128745 130907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3301g00010 4 396 C2C2-CO-like Transcription Factor Family AT1G25440 43.095 2.39e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral3301g00010 zf-B_box 4.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3301g00010 - - gmx:100802113 420.239