Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3301g00003 ATGGCATCTTCTTCTCAGTTTTCTGGTGCAAAGTATGACGTATTTATCAGCTTTAGAGGCTCAGACATACGCCATGGTTTTCTTAGCCATTTGAGAAAGGAATTGCGGCAGAAACAAATTGAAGCCCATGTGGATGACAGACTCGAAAGAGAAGATAAAATGTCACCTGCACTTGGAAGAGCGATTAGAGAATCACTTATCTCACTAATCATATTTTCAAAGGATTATGCTTCATCAAAGCGGTGCTTAGACGAGCTGGTGCAGATTATTGAGTGCAGGGACAACCAGAACCAGATTGTAATTCCTGTTTTCTATAACACAGATCCCTCAGACGTGAGGCATCAAAAAGGTTCTTATGGAGACGCTTTAGCCAAACATGATGAGTATTACAAGGAAAAGGTGCCAATTTGGAGATCATCTCTGAATAAAACTGCTAACTTATCTGGGTTTCACTATTTATCCAACCATGCGGATGAGGCTGAGCTTATAGAAGATATTGCCAAATGTTTGTCAACAAGGTTGAATCTTATGTACCAAAGTGACTTTACAGATCTTGTTGGAATTCATGAAAGAATTGCAGATTTAGAATCACTAATGAACCAAGGATCAGAAGATGTTCGTGTCATTGGAATTTGGGGTATGGGCGGTATCGGTAAGACAACTATTGCCGCTGTAATATTTAACCGATTTTGTTCCGAATTTGAAGGACATTGTTTTTTGGCCAATGTGAGAGAAGAATCAAAGAATCATGGAATCATTTGTTTGAAGAATAAAATGTTCTCTAAACTACTCAAGGAAAATGATTTACATATCGGTACACCAAATGGAATACCCCCTTGTGTCAAGAGAAGGCTTCTTCGAAAAAGGGTTCTTGTTGTTCTTGATGACATTAGTGATTCGGATCAACTAGATAATTTAGTGGGAGCACTTAACTGCTTTGGACTTGGGAGTAGAATCATTATAACAACTAGAGATAAGCAAGTGCTAGCTAAAAATGTTGATAAAATATACGAAGTTAAGCCTTTGATTCGTGATGATGCTGTTCGACTTTTTATGTTGAATGCCTTTGAGAATAATGATGTGGAAATGGGGTGGATTGAATTGTCAAGGAAGTTTATTAGTTATGCTAAAGGCATTCCGTTGGCTCTGAAAGTCTTAGGTTCCTTCCTTTATGGTAAAAGCAGGCAAGAATGGGAAAGCCAACTTGAGAAGCTCAGCAAAATGCCAAATGCAAAAATTCAAGATGTGATGAGACTGGGTTATGATGATCTAGATAGAGAAGAGAAGAACATTTTCTTATATATTGCATGTTTTCTCAAAGGATATGAATCACAACAGATAATTGTTTTGCTTAATTCTTGTGGTTTCTCAACCATTATTGGGTTAAGGGTCCTTCGAGACAAAGCTCTTATAACTGAAGTATCAAACTCCAGAAAATCAATAATATCTATGCATGATTTGATCCAAGAGATGGGTCGGGAAATTGTTGGTGAAGAATCTATTGACAATCCTGGAAAACGTAGTCGATTATGGGATGCTAATGATATTTATCAAGTATTAGCACATAACACGGGCACTAAAGCCATTCAAAGCATTACTCTGAATGTAGCAAAAATTGGAGGGCTCTGCTTAATTCCTCAAGTCTTTTCTAAGATGACAGAGCTAAAGTTTCTCAAGTTTTCCCAACATGATTTTCATGAACAAATCCTCCACCTTCCTCAAGGACTTGAATCTTTGCCAAATGAACTGAGATTTTTTGAGTGGGTTTGCTATCCTTTACCATCCTTGCCTTCCTCATTCTGTCCTAAAAGTCTTGTTGAACTTAAAATGACTTGGAGTCGAGTGGTAAAGCTCTGGGATGGGGTTTTGGATTTTGTGAATTTAAAGAAAATTGACCTCAGTTACTCCACGCATCTGTTGGAACTCCCAGATTTTTCGATGGCGAAAAACCTTGAAGAAGTAGAACTCTCCAGCTGCAAGAGCTTGCGCAAGGTTCATCCCTCTATCCTAACCATCCACAAACTTGTGAAACTGAACCTATCATACTGTAAATCACTTACCATACTTAGAGGTGATGTCCATTTAAGATCCCTCAGTAATCTTTCTCTTAGTGAATGCTCAAGACTCAGGCAATTCTCAGTGACATCAGAGAATATGAAGAACTTAAGTTTGACAGGCACATCTATCAATGAATTGCCTTCGTCTGTGAGGCTTTTAAACAAACTTGAAACATTATACTTAGATCACTGTAAGAACCTTAAGAATCTTCCAAACAAGTTTTCTAAACTCAGTTCTCTTAGAGAACTTCGGATCATTGGTTGCATCCAGCTTGATGCATCGAATCTACACTTGTTACTCGAAGGCTCAAGGTTCCTAGAAACATTGTTGTTGCAAGATTGTCGTAATTTATTTGAACTTCCAGACAATATTAGATTCTTATCCTCATTGCAGCATCTATCACTACATGAATCAGATATTGTGAAGTTGCCTGCAAGCATCAAGCATCTCCAACAACTTGAAAAGCTTAACTTGGGTAATTGCAGGAAGCTTCATTCTGTGCCCGAGCTTCCACCATCCATTAAAGAACTATATACCACTAATTGCACTTCCCTGAAGAGAGTGATGATTTCTTCCATGGCTGCTGATCAATTGAGAGAAAAAATACGAGTGGGTTCTAGATTTCAGAATTGTGTAAACTTGGATGAACATTCACTTAGAGCTGTAGCAATGCATTCTCATGTCAACATGAAGAGATTGGCATATGAGCATTTATCAAATCTAGGACAAGGTAACATCCTAGGTGGTCCAATTGATGTTATTTATCCAGGAAGCAATGTTCCAGAGTGGTTCGTGAACAGGACAAGGCAGTCTTCAGTAACTGTGGACTTGTCTTCTGCTCCGCCGTCTTCCGTGTCTCTGGGTTTCATCTTTTGTGTGGTTGTTTCTAGGTTTCCATCAAACGACAAGAACTTTGTTGGGTGTGATTGCTACTTGGAAATAAATGGTGAAAGGGACATGAACATGGGTGCATGGACGAGCATAAATACTTGTGAATTTATGTCTGATCATGTATGTATATGGTACGATGAACGATGTTGTCTGAAAACAAGTGAAAGCATGGAAGCTGATGAAAGCAATAATCTGAAGATATGGTTCGAGTTCTTTGCTCAGACTGGGAATACCTGGGAGAAGAGAAGGGATATTGCGGTTAAAGAGTGCGGAGTTTGCCCCATTTATGACTCAGAATATCACACCTTCATTGAAGAACTGGAGTTGAGGCCGCAACTGGGATGGTTTGATGAGAATGAAGATGAGGAAGAAGCAATCCATTTTGCACAGAAATCCAATCAACACATGTGTCCACCTCTTCCAACTAAGACTAACTGGAAGACATCGACACAGGGCTTGAAAGATCTCATCAACCTATGA 3429 0.3893 MASSSQFSGAKYDVFISFRGSDIRHGFLSHLRKELRQKQIEAHVDDRLEREDKMSPALGRAIRESLISLIIFSKDYASSKRCLDELVQIIECRDNQNQIVIPVFYNTDPSDVRHQKGSYGDALAKHDEYYKEKVPIWRSSLNKTANLSGFHYLSNHADEAELIEDIAKCLSTRLNLMYQSDFTDLVGIHERIADLESLMNQGSEDVRVIGIWGMGGIGKTTIAAVIFNRFCSEFEGHCFLANVREESKNHGIICLKNKMFSKLLKENDLHIGTPNGIPPCVKRRLLRKRVLVVLDDISDSDQLDNLVGALNCFGLGSRIIITTRDKQVLAKNVDKIYEVKPLIRDDAVRLFMLNAFENNDVEMGWIELSRKFISYAKGIPLALKVLGSFLYGKSRQEWESQLEKLSKMPNAKIQDVMRLGYDDLDREEKNIFLYIACFLKGYESQQIIVLLNSCGFSTIIGLRVLRDKALITEVSNSRKSIISMHDLIQEMGREIVGEESIDNPGKRSRLWDANDIYQVLAHNTGTKAIQSITLNVAKIGGLCLIPQVFSKMTELKFLKFSQHDFHEQILHLPQGLESLPNELRFFEWVCYPLPSLPSSFCPKSLVELKMTWSRVVKLWDGVLDFVNLKKIDLSYSTHLLELPDFSMAKNLEEVELSSCKSLRKVHPSILTIHKLVKLNLSYCKSLTILRGDVHLRSLSNLSLSECSRLRQFSVTSENMKNLSLTGTSINELPSSVRLLNKLETLYLDHCKNLKNLPNKFSKLSSLRELRIIGCIQLDASNLHLLLEGSRFLETLLLQDCRNLFELPDNIRFLSSLQHLSLHESDIVKLPASIKHLQQLEKLNLGNCRKLHSVPELPPSIKELYTTNCTSLKRVMISSMAADQLREKIRVGSRFQNCVNLDEHSLRAVAMHSHVNMKRLAYEHLSNLGQGNILGGPIDVIYPGSNVPEWFVNRTRQSSVTVDLSSAPPSSVSLGFIFCVVVSRFPSNDKNFVGCDCYLEINGERDMNMGAWTSINTCEFMSDHVCIWYDERCCLKTSESMEADESNNLKIWFEFFAQTGNTWEKRRDIAVKECGVCPIYDSEYHTFIEELELRPQLGWFDENEDEEEAIHFAQKSNQHMCPPLPTKTNWKTSTQGLKDLINL 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3301g00003 1142 Gene3D - 342 425 IPR042197 -
Pral3301g00003 1142 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 150 IPR035897 -
Pral3301g00003 1142 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 757 IPR044974 GO:0006952
Pral3301g00003 1142 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 176 - -
Pral3301g00003 1142 Pfam C-JID domain 941 1082 IPR045344 -
Pral3301g00003 1142 SUPERFAMILY L domain-like 484 883 - -
Pral3301g00003 1142 Gene3D Ribonuclease Inhibitor 719 902 IPR032675 -
Pral3301g00003 1142 Gene3D Ribonuclease Inhibitor 515 718 IPR032675 -
Pral3301g00003 1142 Gene3D - 7 177 IPR035897 -
Pral3301g00003 1142 PRINTS Disease resistance protein signature 208 223 - -
Pral3301g00003 1142 PRINTS Disease resistance protein signature 693 709 - -
Pral3301g00003 1142 PRINTS Disease resistance protein signature 284 298 - -
Pral3301g00003 1142 PRINTS Disease resistance protein signature 376 390 - -
Pral3301g00003 1142 SMART till_3 11 147 IPR000157 GO:0007165
Pral3301g00003 1142 Pfam TIR domain 11 188 IPR000157 GO:0007165
Pral3301g00003 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 435 IPR027417 -
Pral3301g00003 1142 Pfam NB-ARC domain 196 411 IPR002182 GO:0043531
Pral3301g00003 1142 ProSiteProfiles TIR domain profile. 10 174 IPR000157 GO:0007165
Pral3301g00003 1142 Gene3D - 178 337 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3301g00003 Pral-Chr3301 66557 72510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3301g00003 6 849 WRKY Transcription Factor Family AT4G12020 34.226 4.48e-119 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3301g00003 - - ccaj:109805840 1430.62