Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3281g00015 ATGTCAAGTGGAGCAACACATTGGTGTTATGAGTGCAGACGGCCAATCATACTTGAAGGGAGAGATTTCACATGCCCTCATTGTGATGGAGGCTTTGTGATAGAACTTGGTGAGGTGCAAAGAACAGAACATCTGGAAGATTTTCATCAAGTACCCGATATCTTTGGTGCTATTCATGCTGTTATGGGGAGGAGATTTCCAGAAACAAGTTTTCTAGATTCAGTTGATAACATCATGAGGCACAGAATGGCTGGACGAAACCCAAACTTCGATGTGAGAAGGCGCTCTATAGCTGCCATGGGTCCTGATCAGAGCTGGGGTGTTATTAGTTCTGGTCCTTACTTGATATTTCATGGCCAAGTTCCTGGATTCACTTTGACTAATGGCATCCCTAGAGGCGGTCCTAGGCGTGTTGATGTTAGTGACTACTTTATGGGGCCTGGGCTGGAAGAACTTATTGAACAACTCACTATGAATGATCGGCATGGTCCGCCCCCAGCCTCGCGTTCTTCAATTGATGCAATGCCTACAATAACAATCACACAGGCTCATCTTCGTTCTGACTCTCACTGTCCGGTTTGTCAAGACAAATTTGAACTTGGTTCTGAGGCAAGGGCGATGCCATGTAGCCATGTTTATCATTCTGACTGTATTGTCCCTTGGTTGGTTCAACATAACTCATGCCCTGTTTGCCGTGTTGAGTTACCACCACATGGACAAGTTAGTCCTCATGCTAGTCGTAATGTGGGAGGAAGTAATGCAGAAAGCACCAACAATGATAACCTTAGAGAGAGAGAGCATAGCCAACAGAACCAAGGAAGGCGGAGTCCGTTTTCATTTTTGTGGCCATTCCGTTCTTCTAGCTCAAGCAGTAATCAATATGCTGAGACTAGAGGAAGCAACTCTTCAAATAGTCGTGACCAGAATAATGGAACGAACCATGGCCGATGGCGCTTTGATGAGTAA 966 0.4545 MSSGATHWCYECRRPIILEGRDFTCPHCDGGFVIELGEVQRTEHLEDFHQVPDIFGAIHAVMGRRFPETSFLDSVDNIMRHRMAGRNPNFDVRRRSIAAMGPDQSWGVISSGPYLIFHGQVPGFTLTNGIPRGGPRRVDVSDYFMGPGLEELIEQLTMNDRHGPPPASRSSIDAMPTITITQAHLRSDSHCPVCQDKFELGSEARAMPCSHVYHSDCIVPWLVQHNSCPVCRVELPPHGQVSPHASRNVGGSNAESTNNDNLREREHSQQNQGRRSPFSFLWPFRSSSSSSNQYAETRGSNSSNSRDQNNGTNHGRWRFDE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3281g00015 321 SMART ring_2 191 231 IPR001841 -
Pral3281g00015 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 236 - -
Pral3281g00015 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 238 IPR013083 -
Pral3281g00015 321 FunFam E3 ubiquitin-protein ligase RING1-like 155 238 - -
Pral3281g00015 321 Pfam zinc-ribbon 6 35 IPR039525 GO:0061630
Pral3281g00015 321 SUPERFAMILY RING/U-box 171 238 - -
Pral3281g00015 321 MobiDBLite consensus disorder prediction 272 312 - -
Pral3281g00015 321 Pfam Ring finger domain 190 232 IPR001841 -
Pral3281g00015 321 MobiDBLite consensus disorder prediction 241 321 - -
Pral3281g00015 321 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3281g00015 Pral-Chr3281 420877 423634 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3281g00015 135 249 C3H Transcription Factor Family AT5G01980 41.880 4.96e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3281g00015 K11982 - gmx:100813674 451.44