Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3274g00004 ATGGCCACCTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCATATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTAGTATCATTCAGATTAGTCATCGATAGAGAAACTGGAAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACTGCTCTAAGTGCCCGCCGTAACCTTCAGGGTTATGAAATTAATGGACGGCAGTTGCGTGTTGATTTTGCTGAAAATGACAAAGGCGCTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGATTGGCTGCAAATGTTGACCCTCACAAACAAGTAGCTGGGCCAGCTGTCCATGGGGAAGCTGCCCACCGTCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAACTGTCATGGAAGCAGCTCTAGGAGGGCCTCAATCTGGCATCCAGCCAAATCAAAATGGTTTGCGGGTTCAGTCAGGATTGGCCCATGACCCTTTAACTTTGCATCTGGCTAGACTATCTCGGAATCAGCTGACTGAGATTATCTCTGAGCTCAAGGCAATGGCTACACATAACAAGGAATTAGCTCGTCAATTGTTACTTTCTAGACCGCAGTTGCCTAAGGCTCTTTTTCAGGCACAGATAATGCTAGGAATGGTGACCCCTCAAGTGTTGCAAATGCCAAACCTTAGGCAAGTTGCAGGTGAAACCTCCCAGCCTCTGGTAGATGAAAGCCAGCTCGGTCAGTCTGCAGTGCTTCAATCGCTAGCTGGGCTGCCTTCTCATGCGCAGATCAAATTGCCATCTGGCTTGATGCCCAATATTCAAGAAACTCAAGCAAGTGCTTTACATCATAATTCTTTGGTTCCTAATCAATTACCTGCACACCCAAAGCCTCCTTTGCAGCCTCGAATCCAGCTTCCACAACATCCAAGCAACCCAGTGGTACAGCTGGGCACATTGCCTGGGCATTCTAGTTCATCTCTTCCTTCTATGCGCCCCCAGTCTTCATTTGGTTTGCCTGTTAGACCACCAATTCAGCTGGCAAGTTCAAATTCTCTGAATCAGCCATTGCATTTGCTACAACATTCCGGACAAATTGGTAACTCAAGTGTAGGACAAAGTATTCGGATGATTCATCCCGATGCAGGCTTTCAGCCTGGCTCGTCCATATCATCAGGTATTCCTCAGTCAATTGGTAGGGAAGCAGACAGATCAGCTAAAGTCGTTGAAGATTCTAATTGGGCCAAGAAAAGTAGTACATATTCAAACATTGCTCTCGGATCAGGAGAGAAAACAAATGAGCCTTTGGAACCATTTAGCCGCCCTTCAAAGCTGGCTAAATTGGATGATGGAAGGAGCTCCTCTTTCTCCGCAGCAGTTGCGAATGTACCTGTTTCCAAGGGATCTTCCCATGTTCTTGGAAGTGTGTCATTGCCTGTAAATGCAACTTCCAAATCAGAAGCGCGATACCCTGAGCAACAATCCTCTCAGGCTCAGCTACCTTCGGATGTGGAATCGGTTTTACTGCAACAAGTGTTGAGTCTAACGCCGGAGCAATTGAGTTCCTTGCCGCCGGAGCAGCAACAGCAGGTTTTTCAGCTTCAGCAGGCTCTCCGGCAAGATCAGACCCAGCCTTCATAG 1650 0.4752 MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLAANVDPHKQVAGPAVHGEAAHRQPIGLHIAITAATVMEAALGGPQSGIQPNQNGLRVQSGLAHDPLTLHLARLSRNQLTEIISELKAMATHNKELARQLLLSRPQLPKALFQAQIMLGMVTPQVLQMPNLRQVAGETSQPLVDESQLGQSAVLQSLAGLPSHAQIKLPSGLMPNIQETQASALHHNSLVPNQLPAHPKPPLQPRIQLPQHPSNPVVQLGTLPGHSSSSLPSMRPQSSFGLPVRPPIQLASSNSLNQPLHLLQHSGQIGNSSVGQSIRMIHPDAGFQPGSSISSGIPQSIGREADRSAKVVEDSNWAKKSSTYSNIALGSGEKTNEPLEPFSRPSKLAKLDDGRSSSFSAAVANVPVSKGSSHVLGSVSLPVNATSKSEARYPEQQSSQAQLPSDVESVLLQQVLSLTPEQLSSLPPEQQQQVFQLQQALRQDQTQPS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3274g00004 549 Pfam Hinge domain of cleavage stimulation factor subunit 2 163 228 IPR025742 -
Pral3274g00004 549 Gene3D - 505 548 IPR038192 -
Pral3274g00004 549 Pfam Transcription termination and cleavage factor C-terminal 511 543 IPR026896 GO:0031124
Pral3274g00004 549 MobiDBLite consensus disorder prediction 523 549 - -
Pral3274g00004 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Pral3274g00004 549 SMART rrm1_1 8 81 IPR000504 GO:0003723
Pral3274g00004 549 Gene3D - 154 230 - -
Pral3274g00004 549 MobiDBLite consensus disorder prediction 310 337 - -
Pral3274g00004 549 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Pral3274g00004 549 MobiDBLite consensus disorder prediction 84 108 - -
Pral3274g00004 549 FunFam Cleavage stimulating factor 64 155 230 - -
Pral3274g00004 549 FunFam Cleavage stimulating factor 64 1 116 - -
Pral3274g00004 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Pral3274g00004 549 MobiDBLite consensus disorder prediction 382 416 - -
Pral3274g00004 549 Gene3D - 1 111 IPR012677 -
Pral3274g00004 549 MobiDBLite consensus disorder prediction 291 339 - -
Pral3274g00004 549 CDD RRM_CSTF2_RNA15_like 7 83 - -
Pral3274g00004 549 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 545 - -
Pral3274g00004 549 MobiDBLite consensus disorder prediction 295 309 - -
Pral3274g00004 549 MobiDBLite consensus disorder prediction 428 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3274g00004 Pral-Chr3274 35000 42338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3274g00004 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.31e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3274g00004 K14407 - gmx:100806489 680.633