Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3270g00001 ATGAATATTCCTTCTCGTGTCAGAGTTAGATATAACTGTGAAGTTCTTTATCCACTAAGCACAATTATCCCTACTGATCCCAATAATTATCCCATTAATCCTCCTAATGATGATGATCAATACATCAACATCACAGCTGCTAAATCAGTATGGAACTGGCAAATGTTGGATCCTACACGAGTTGAAAGCTCAACCCTTGTTAATACATATTCCACAACACATGATTTCTTCAACATCTCAAAAAACTCCATAGATCAAATTGCAAACCTTATTCCTTCTCATTTTGGTATCCCTTCATTCTCCGGCAGATGCATGGCAAGAAAGATCTTGGATTCTGCAAGAAACATGCTTAATAATACCCATAAAGACCAGAAGATCTTGTTCATGGCTGTGCTTATTGAAGTTGTTAAAACTTGGTGTTATCATTCTGATCCTACCACTGGTGATTCTTATCATCAGGCTGCGGAGGCATCTTTGGAAGCCCTGGCGAATCAAAGTCTTATGGCAGTGCCTGCAACTAAATCATTTATTGAGGAATTGGAAACTGTGAAGGTTGAAGAAGAAGAAGAAAAGTTAATAAGTAACTGTGCGATTTGTTTGGAAGATTTCAAAGTTGGATTCTTAGAAGTTACTCGTTTGCCTTGCTCGCATTTATTTCATAAAGCTTGCATTGTTGAATGGCTGCAGAACGATGGTATCTGTCCTTTGTGTCGTTTTCGAATGCCTATTGAATGA 735 0.3796 MNIPSRVRVRYNCEVLYPLSTIIPTDPNNYPINPPNDDDQYINITAAKSVWNWQMLDPTRVESSTLVNTYSTTHDFFNISKNSIDQIANLIPSHFGIPSFSGRCMARKILDSARNMLNNTHKDQKILFMAVLIEVVKTWCYHSDPTTGDSYHQAAEASLEALANQSLMAVPATKSFIEELETVKVEEEEEKLISNCAICLEDFKVGFLEVTRLPCSHLFHKACIVEWLQNDGICPLCRFRMPIE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3270g00001 244 ProSiteProfiles Zinc finger RING-type profile. 196 238 IPR001841 -
Pral3270g00001 244 SMART ring_2 196 237 IPR001841 -
Pral3270g00001 244 CDD RING-H2_PA-TM-RING 196 238 - -
Pral3270g00001 244 Pfam Ring finger domain 195 238 IPR001841 -
Pral3270g00001 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 243 IPR013083 -
Pral3270g00001 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 115 242 - -
Pral3270g00001 244 SUPERFAMILY RING/U-box 179 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3270g00001 Pral-Chr3270 7846 8580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3270g00001 171 242 C3H Transcription Factor Family AT1G14200 41.667 4.17e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3270g00001 - - pcin:129316560 137.117