Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral3269g00081 | ATGTGCAACTGTGTGGAAAATGAAGGCAGTGATAGAGAGAAAAAGATGCTTCCATGCAAGAGTTGTGGTAAAAAGTACCACATAAACTGCCTAAGAGTTTGGGCTCAACATAGAGATTTATTTCATTGGACTTCATGGACCTGTCCTGCTTGCCTAATTTGCGAGGCTTGCCGAAGGACTGGAGATCCAAGTAAGTTCATGTTCTGCAAAAGGTGTAATGATGCTTACCATTGCTATTGTCTCCAACCTCCTCAAAAGAACATTAGTTCGGGGCCCTATTTGTGCACAAAACATGCAAGGTGTCACAGTTGTGGATCCAATGTGCCAGGAAATGGATCAAGTGTAAGGTGGTTTCTGGGATACACCTGCTGTGATGCATGTGGAAGGTTGTTTATGAAAGGGAACTACTGTCCTGTCTGTTTGAAGGTTTATAGAGATTCAGAATTGACACCAATGGTTTGCTGCGATATTTGCCAGCGCTGGGTACATTGCTATTGTGATGGTATTAGTGATGAAAAATATCACCAATTTCAAGTAGATGGGAATCTGCAGTATAGATGTCCTGCATGTCGTGGTGAATGTTATGAGGTCAAAAATATTAAGGATGCCATTCAAGAGCTCTGGAAGAGAAAGGATGTAGCCGACAGAGATTTAATTGCAAGCTTGAGGGTTCAGGCTGGTTTACCAACTCAAGAAGAAACTTTTTCTATTTCACCATATTCAGATGATGAAAATGGTGGACCTGTAAAGAGAAATGAGGTTGGCAATCTCAATTCTTCACCTGCTGCTGGATGTCCTGTCAGTCAGTCAGGGATATTGAAGGGCAAGTTTATAGAAGAGGTGTCATTTAGTGATAAAGAGCAGAAAACTAGAGGTTTTCAAATTAGGAACACTAAGGCACATGGCGTGGATCGTGTGGAGGAGACTGGAGAAAATGACAAGAGGACTCAAACTGTGCAAGGGAAGAAGTTGATTGTCAATTTGGGGCCACAGAAAGTTAATATGACTAGTTCTCCACAATCCGATGCCATAAGTTGCCAAAAAGATCAAGATATGGTTGCTCCCAGTGGGAGCAGGGTTGACACTCGTCAATCAAAAGTATTGAAGGTTTTTAGAAGAGAGAGAAATCTCAGAGGTAATATTTCTGGGGAAAGTGAAGCTGTTCCTTTAGAGCAACCTCGCATCTTGCTTGAAAAACGTAGTTCTGAAGGAATAGCTGATCAAGTTGGAAATGGAGCAGCAATGTCGGGAGGTGAGAGGACGTCTTTGGGAAGGCCTCCAGAGGGGAGATTTGGTTCAAATGATGAATCAGATGACAATGAGTATCAGACACCTTCACATTCTTTGCCCAAAGATTCTAAACCCTTGCTGAGGATCAAGTTCAAGAAACCTGGCATTGAAAATCAAAATTTGTCTTATTGGGAGGGGATGAGTGTGATCAAGGGTCAGAGGTCAAAAAGGAAGAGACCTTCACCATTGACGAATAAAGCATCTCTCCATTACGAGGACGTAACGCATTCAAATCAGAACACTCAAATGGATGAAATAATGGATGCGAACTGGATATTGATGAAATTGGGTAAAGATGCAATCGGCAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGAACAAAGGAGCAGTCACTGGCATAATTAAAGGTACTTCAAAGCTTAGTGTTGCCTTGGATGATGGGACAGTGAAGATGTTAGATCTTAACAAGCAAGCGGTCCGATTTGTTCCTCAGAAGCACAAGAGTTCAAAAGCTTGA | 1776 | 0.42 | MCNCVENEGSDREKKMLPCKSCGKKYHINCLRVWAQHRDLFHWTSWTCPACLICEACRRTGDPSKFMFCKRCNDAYHCYCLQPPQKNISSGPYLCTKHARCHSCGSNVPGNGSSVRWFLGYTCCDACGRLFMKGNYCPVCLKVYRDSELTPMVCCDICQRWVHCYCDGISDEKYHQFQVDGNLQYRCPACRGECYEVKNIKDAIQELWKRKDVADRDLIASLRVQAGLPTQEETFSISPYSDDENGGPVKRNEVGNLNSSPAAGCPVSQSGILKGKFIEEVSFSDKEQKTRGFQIRNTKAHGVDRVEETGENDKRTQTVQGKKLIVNLGPQKVNMTSSPQSDAISCQKDQDMVAPSGSRVDTRQSKVLKVFRRERNLRGNISGESEAVPLEQPRILLEKRSSEGIADQVGNGAAMSGGERTSLGRPPEGRFGSNDESDDNEYQTPSHSLPKDSKPLLRIKFKKPGIENQNLSYWEGMSVIKGQRSKRKRPSPLTNKASLHYEDVTHSNQNTQMDEIMDANWILMKLGKDAIGKRVEVHQTSDNSWNKGAVTGIIKGTSKLSVALDDGTVKMLDLNKQAVRFVPQKHKSSKA | 591 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral3269g00081 | 591 | Pfam | PHD-finger | 136 | 191 | IPR019787 | - | |
| Pral3269g00081 | 591 | Pfam | PHD-finger | 53 | 97 | IPR019787 | - | |
| Pral3269g00081 | 591 | SUPERFAMILY | FYVE/PHD zinc finger | 3 | 52 | IPR011011 | - | |
| Pral3269g00081 | 591 | CDD | PHD_SF | 4 | 51 | - | - | |
| Pral3269g00081 | 591 | PANTHER | HL01030P-RELATED | 1 | 191 | - | - | |
| Pral3269g00081 | 591 | MobiDBLite | consensus disorder prediction | 392 | 455 | - | - | |
| Pral3269g00081 | 591 | SUPERFAMILY | FYVE/PHD zinc finger | 135 | 191 | IPR011011 | - | |
| Pral3269g00081 | 591 | FunFam | PHD finger family protein | 131 | 193 | - | - | |
| Pral3269g00081 | 591 | MobiDBLite | consensus disorder prediction | 333 | 362 | - | - | |
| Pral3269g00081 | 591 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 52 | IPR013083 | - | |
| Pral3269g00081 | 591 | MobiDBLite | consensus disorder prediction | 333 | 347 | - | - | |
| Pral3269g00081 | 591 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 193 | IPR013083 | - | |
| Pral3269g00081 | 591 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 100 | IPR013083 | - | |
| Pral3269g00081 | 591 | ProSitePatterns | Zinc finger PHD-type signature. | 124 | 190 | IPR019786 | - | |
| Pral3269g00081 | 591 | SUPERFAMILY | FYVE/PHD zinc finger | 43 | 104 | IPR011011 | - | |
| Pral3269g00081 | 591 | ProSitePatterns | Zinc finger PHD-type signature. | 2 | 57 | IPR019786 | - | |
| Pral3269g00081 | 591 | SMART | PHD_3 | 53 | 99 | IPR001965 | - | |
| Pral3269g00081 | 591 | SMART | PHD_3 | 136 | 191 | IPR001965 | - | |
| Pral3269g00081 | 591 | SMART | PHD_3 | 1 | 52 | IPR001965 | - | |
| Pral3269g00081 | 591 | ProSiteProfiles | Zinc finger PHD-type profile. | 134 | 193 | IPR019787 | - | |
| Pral3269g00081 | 591 | ProSiteProfiles | Zinc finger PHD-type profile. | 1 | 54 | IPR019787 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral3269g00081 | Pral-Chr3269 | 587670 | 593029 | Dispersed/Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Pral3269g00081 | PHD | 6.1e-07 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral3269g00081 | - | - | tpra:123921045 | 692.575 |