Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3269g00080 ATGGGATTTCATGTAGCTTGCCCAATTACATGTCGCCGAATCTGCTACTGCTCCTTAGGATTCCCTCGGAGTCTCCATACTGTAGCGGCCAAGAATGGGTTCCTCGATGACGTTGTCTGTCTTCGGGAATTCCTTAAGGATCCCTCCGGACTTGGAGTTTCCTCGGACTCCTCGCTCACCTTGCAAGTCGCGGTCCCCAAGGTTCTGCAATTGCCGCCTCCGCCCGGGCAATTGAAGTCCTCAGTGGTCGGAGATGCGGTGAACGAGGCGGCTTCGATGCAGGCCAAGCGGGTTGCTATGCAGCGGAAGGGAGCTGCCGCCATGATTGCCGCCGAAGAGTACGCCCGTCGTTTTGAGTCCGGGGATGTGCTGGCAAAATCAGGAAAGACCACTGGAGAAGAGTGTAGTGAATCAGATGTTAAAGTCTTTTGTCGGATGTGCAACTGTGTGGAAAATGAAGGCAGTGATAGAGAGAAAAAGATGCTTCCATGCAAGAGTTGTGGTAAAAAGTACCACATAAACTGCCTAAGAGTTTGGGCTCAACATAGAGATTTATTTCATTGGACTTCATGGACCTGTCCTGCTTGCCTAATTTGCGAGGCTTGCCGAAGGACTGGAGATCCAAGTAAGTTCATGTTCTGCAAAAGAACATTAGTTCGGGGCCCTATTTGTGCACAAAACATGCAAGGTGTCACAGTTGTGGATCCAATGTGCCAGGAAATGGATCAAGTGTGGTTTCTGGGATACACCTGCTGTGATGCATGTGGAAGGTTGTTTATGAAAGGGAACTACTGTCCTGTCTGTTTGAAGGTTTATAGAGATTCAGAATTGACACCAATGGTTTGCTGCGATATTTGCCAGCGCTGGGTACATTGCTATTGTGATGGTATTAGTGATGAAAAATATCACCAATTTCAAGTAGATGGGAATCTGCAGTATAGATGTCCTGCATGTCGTGGTGAATGTTATGAGGTCAAAAATATTAAGGATGCCATTCAAGAGCTCTGGAAGAGAAAGGATGTAGCCGACAGAGATTTAATTGCAAGCTTGAGGGTTCAGGCTGGTTTACCAACTCAAGAAGAAACTTTTTCTATTTCACCATATTCAGATGATGAAAATGGTGGACCTGTAAAGAGAAATGAGGTTGGCAATCTCAATTCTTCACCTGCTGCTGGATGTCCTGTCAGTCAGTCAGGGATATTGAAGGGCAAGTTTATAGAAGAGGTGTCATTTAGTGATAAAGAGCAGAAAACTAGAGGTTTTCAAATTAGGAACACTAAGGCACATGGCGTGGATCGTGTGGAGGAGACTGGAGAAAATGACAAGAGGACTCAAACTGTGCAAGGGAAGAAGTTGATTGTCAATTTGGGGCCACAGAAAGTTAATATGACTAGTTCTCCACAATCCGATGCCATAAGTTGCCAAAAAGATCAAGATATGGTTGCTCCCAGTGGGAGCAGGGTTGACACTCGTCAATCAAAAGTATTGAAGGTTTTTAGAAGAGAGAGAAATCTCAGAGGTAATATTTCTGGGGAAAGTGAAGCTGTTCCTTTAGAGCAACCTCGCATCTTGCTTGAAAAACGTAGTTCTGAAGGAATAGCTGATCAAGTTGGAAATGGAGCAGCAATGTCGGGAGGTGAGAGGACGTCTTTGGGAAGGCCTCCAGAGGGGAGATTTGGTTCAAATGATGAATCAGATGACAATGAGTATCAGACACCTTCACATTCTTTGCCCAAAGATTCTAAACCCTTGCTGAGGATCAAGTTCAAGAAACCTGGCATTGAAAATCAAAATTTGTCTTATTGGGAGGGGATGAGTGTGATCAAGGGTCAGAGGTCAAAAAGGAAGAGACCTTCACCATTGACGAATAAAGCATCTCTCCATTACGAGGACGTAACGCATTCAAATCAGAACACTCAAATGGATGAAATAATGGATGCGAACTGGATATTGATGAAATTGGGTAAAGATGCAATCGGCAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGAACAAAGGAGCAGTCACTGGCATAATTAAAGGTACTTCAAAGCTTAGTGTTGCCTTGGATGATGGGACAGTGAAGATGTTAGATCTTAACAAGCAAGCGGTCCGATTTGTTCCTCAGAAGCACAAGAGTTCAAAAGCTTGA 2160 0.4468 MGFHVACPITCRRICYCSLGFPRSLHTVAAKNGFLDDVVCLREFLKDPSGLGVSSDSSLTLQVAVPKVLQLPPPPGQLKSSVVGDAVNEAASMQAKRVAMQRKGAAAMIAAEEYARRFESGDVLAKSGKTTGEECSESDVKVFCRMCNCVENEGSDREKKMLPCKSCGKKYHINCLRVWAQHRDLFHWTSWTCPACLICEACRRTGDPSKFMFCKRTLVRGPICAQNMQGVTVVDPMCQEMDQVWFLGYTCCDACGRLFMKGNYCPVCLKVYRDSELTPMVCCDICQRWVHCYCDGISDEKYHQFQVDGNLQYRCPACRGECYEVKNIKDAIQELWKRKDVADRDLIASLRVQAGLPTQEETFSISPYSDDENGGPVKRNEVGNLNSSPAAGCPVSQSGILKGKFIEEVSFSDKEQKTRGFQIRNTKAHGVDRVEETGENDKRTQTVQGKKLIVNLGPQKVNMTSSPQSDAISCQKDQDMVAPSGSRVDTRQSKVLKVFRRERNLRGNISGESEAVPLEQPRILLEKRSSEGIADQVGNGAAMSGGERTSLGRPPEGRFGSNDESDDNEYQTPSHSLPKDSKPLLRIKFKKPGIENQNLSYWEGMSVIKGQRSKRKRPSPLTNKASLHYEDVTHSNQNTQMDEIMDANWILMKLGKDAIGKRVEVHQTSDNSWNKGAVTGIIKGTSKLSVALDDGTVKMLDLNKQAVRFVPQKHKSSKA 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3269g00080 719 Pfam PHD-finger 264 319 IPR019787 -
Pral3269g00080 719 ProSiteProfiles Zinc finger PHD-type profile. 262 321 IPR019787 -
Pral3269g00080 719 CDD PHD_SF 149 196 - -
Pral3269g00080 719 MobiDBLite consensus disorder prediction 520 583 - -
Pral3269g00080 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 321 IPR013083 -
Pral3269g00080 719 SUPERFAMILY FYVE/PHD zinc finger 263 319 IPR011011 -
Pral3269g00080 719 SMART PHD_3 143 197 IPR001965 -
Pral3269g00080 719 SMART PHD_3 264 319 IPR001965 -
Pral3269g00080 719 Gene3D - 77 198 - -
Pral3269g00080 719 ProSiteProfiles Zinc finger PHD-type profile. 141 199 IPR019787 -
Pral3269g00080 719 FunFam PHD finger family protein 259 321 - -
Pral3269g00080 719 SUPERFAMILY FYVE/PHD zinc finger 134 205 IPR011011 -
Pral3269g00080 719 MobiDBLite consensus disorder prediction 460 475 - -
Pral3269g00080 719 MobiDBLite consensus disorder prediction 460 490 - -
Pral3269g00080 719 PANTHER HISTONE ACETYLTRANSFERASE 6 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3269g00080 Pral-Chr3269 586999 593029 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral3269g00080 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3269g00080 - - tpra:123921045 735.717