Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral3269g00079 | ATGGGATTTCATGTAGCTTGCCCAATTACATGTCGCCGAATCTGCTACTGCTCCTTAGGATTCCCTCGGAGTCTCCATACTGTAGCGGCCAAGAATGGGTTCCTCGATGACGTTGTCTGTCTTCGGGAATTCCTTAAGGATCCCTCCGGACTTGGAGTTTCCTCGGACTCCTCGCTCACCTTGCAAGTCGCGGTCCCCAAGGTTCTGCAATTGCCGCCTCCGCCCGGGCAATTGAAGTCCTCAGTGGTCGGAGATGCGGTGAACGAGGCGGCTTCGATGCAGGCCAAGCGGGTTGCTATGCAGCGGAAGGGAGCTGCCGCCATGATTGCCGCCGAAGAGTACGCCCGTCGTTTTGAGTCCGGGGATGTGCTGGCAAAATCAGGAAAGACCACTGGAGAAGAGTGTAGTGAATCAGATGTTAAAGTCTTTTGTCGGATGTGCAACTGTGTGGAAAATGAAGGCAGTGATAGAGAGAAAAAGATGCTTCCATGCAAGAGTTGTGGTAAAAAGTACCACATAAACTGCCTAAGAGTTTGGGCTCAACATAGAGATTTATTTCATTGGACTTCATGGACCTGTCCTGCTTGCCTAATTTGCGAGGCTTGCCGAAGGACTGGAGATCCAAGTAAGTTCATGTTCTGCAAAAGGTGTAATGATGCTTACCATTGCTATTGTCTCCAACCTCCTCAAAAGAACATTAGTTCGGGGCCCTATTTGTGCACAAAACATGCAAGGTGTCACAGTTGTGGATCCAATGTGCCAGGAAATGGATCAAGTGTAAGGTGGTTTCTGGGATACACCTGCTGTGATGCATGTGGAAGGTTGTTTATGAAAGGGAACTACTGTCCTGTCTGTTTGAAGGTTTATAGAGATTCAGAATTGACACCAATGGTTTGCTGCGATATTTGCCAGCGCTGGGTACATTGCTATTGTGATGGTATTAGTGATGAAAAATATCACCAATTTCAAGTAGATGGGAATCTGCAGTATAGATGTCCTGCATGTCGTGGTGAATGTTATGAGGTCAAAAATATTAAGGATGCCATTCAAGAGCTCTGGAAGAGAAAGGATGTAGCCGACAGAGATTTAATTGCAAGCTTGAGGGTTCAGGCTGGTTTACCAACTCAAGAAGAAACTTTTTCTATTTCACCATATTCAGATGATGAAAATGGTGGACCTGTAAAGAGAAATGAGGTTGGCAATCTCAATTCTTCACCTGCTGCTGGATGTCCTGTCAGTCAGTCAGGGATATTGAAGGGCAAGTTTATAGAAGAGGTGTCATTTAGTGATAAAGAGCAGAAAACTAGAGGTTTTCAAATTAGGAACACTAAGGCACATGGCGTGGATCGTGTGGAGGAGACTGGAGAAAATGACAAGAGGACTCAAACTGTGCAAGGGAAGAAGTTGATTGTCAATTTGGGGCCACAGAAAGTTAATATGACTAGTTCTCCACAATCCGATGCCATAAGTTGCCAAAAAGATCAAGATATGGTTGCTCCCAGTGGGAGCAGGGTTGACACTCGTCAATCAAAAGTATTGAAGGTTTTTAGAAGAGAGAGAAATCTCAGAGGTAATATTTCTGGGGAAAGTGAAGCTGTTCCTTTAGAGCAACCTCGCATCTTGCTTGAAAAACGTAGTTCTGAAGGAATAGCTGATCAAGTTGGAAATGGAGCAGCAATGTCGGGAGGTGAGAGGACGTCTTTGGGAAGGCCTCCAGAGGGGAGATTTGGTTCAAATGATGAATCAGATGACAATGAGTATCAGACACCTTCACATTCTTTGCCCAAAGATTCTAAACCCTTGCTGAGGATCAAGTTCAAGAAACCTGGCATTGAAAATCAAAATTTGTCTTATTGGGAGGGGATGAGTGTGATCAAGGGTCAGAGGTCAAAAAGGAAGAGACCTTCACCATTGACGAATAAAGCATCTCTCCATTACGAGGACGTAACGCATTCAAATCAGAACACTCAAATGGATGAAATAATGGATGCGAACTGGATATTGATGAAATTGGGTAAAGATGCAATCGGCAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGAACAAAGGAGCAGTCACTGGCATAATTAAAGGTACTTCAAAGCTTAGTGTTGCCTTGGATGATGGGACAGTGAAGATGTTAGATCTTAACAAGCAAGCGGTCCGATTTGTTCCTCAGAAGCACAAGAGTTCAAAAGCTTGA | 2211 | 0.446 | MGFHVACPITCRRICYCSLGFPRSLHTVAAKNGFLDDVVCLREFLKDPSGLGVSSDSSLTLQVAVPKVLQLPPPPGQLKSSVVGDAVNEAASMQAKRVAMQRKGAAAMIAAEEYARRFESGDVLAKSGKTTGEECSESDVKVFCRMCNCVENEGSDREKKMLPCKSCGKKYHINCLRVWAQHRDLFHWTSWTCPACLICEACRRTGDPSKFMFCKRCNDAYHCYCLQPPQKNISSGPYLCTKHARCHSCGSNVPGNGSSVRWFLGYTCCDACGRLFMKGNYCPVCLKVYRDSELTPMVCCDICQRWVHCYCDGISDEKYHQFQVDGNLQYRCPACRGECYEVKNIKDAIQELWKRKDVADRDLIASLRVQAGLPTQEETFSISPYSDDENGGPVKRNEVGNLNSSPAAGCPVSQSGILKGKFIEEVSFSDKEQKTRGFQIRNTKAHGVDRVEETGENDKRTQTVQGKKLIVNLGPQKVNMTSSPQSDAISCQKDQDMVAPSGSRVDTRQSKVLKVFRRERNLRGNISGESEAVPLEQPRILLEKRSSEGIADQVGNGAAMSGGERTSLGRPPEGRFGSNDESDDNEYQTPSHSLPKDSKPLLRIKFKKPGIENQNLSYWEGMSVIKGQRSKRKRPSPLTNKASLHYEDVTHSNQNTQMDEIMDANWILMKLGKDAIGKRVEVHQTSDNSWNKGAVTGIIKGTSKLSVALDDGTVKMLDLNKQAVRFVPQKHKSSKA | 736 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral3269g00079 | 736 | CDD | PHD_SF | 149 | 196 | - | - | |
| Pral3269g00079 | 736 | SUPERFAMILY | FYVE/PHD zinc finger | 279 | 336 | IPR011011 | - | |
| Pral3269g00079 | 736 | SUPERFAMILY | FYVE/PHD zinc finger | 188 | 249 | IPR011011 | - | |
| Pral3269g00079 | 736 | SUPERFAMILY | FYVE/PHD zinc finger | 134 | 199 | IPR011011 | - | |
| Pral3269g00079 | 736 | ProSiteProfiles | Zinc finger PHD-type profile. | 279 | 338 | IPR019787 | - | |
| Pral3269g00079 | 736 | Pfam | PHD-finger | 198 | 242 | IPR019787 | - | |
| Pral3269g00079 | 736 | MobiDBLite | consensus disorder prediction | 478 | 507 | - | - | |
| Pral3269g00079 | 736 | Gene3D | - | 77 | 197 | - | - | |
| Pral3269g00079 | 736 | SMART | PHD_3 | 143 | 197 | IPR001965 | - | |
| Pral3269g00079 | 736 | SMART | PHD_3 | 281 | 336 | IPR001965 | - | |
| Pral3269g00079 | 736 | SMART | PHD_3 | 198 | 244 | IPR001965 | - | |
| Pral3269g00079 | 736 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 248 | IPR013083 | - | |
| Pral3269g00079 | 736 | ProSiteProfiles | Zinc finger PHD-type profile. | 141 | 199 | IPR019787 | - | |
| Pral3269g00079 | 736 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 276 | 338 | IPR013083 | - | |
| Pral3269g00079 | 736 | FunFam | PHD finger family protein | 276 | 338 | - | - | |
| Pral3269g00079 | 736 | PANTHER | HL01030P-RELATED | 89 | 337 | - | - | |
| Pral3269g00079 | 736 | MobiDBLite | consensus disorder prediction | 537 | 600 | - | - | |
| Pral3269g00079 | 736 | MobiDBLite | consensus disorder prediction | 478 | 492 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral3269g00079 | Pral-Chr3269 | 586999 | 593029 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Pral3269g00079 | PHD | 5.3e-07 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral3269g00079 | - | - | tpra:123921045 | 833.558 |