Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3269g00019 ATGATATCATGTCATTGTGTTTTTTTATATCTTTCCATTGGAATTGCAGACTCCTCTTTGATTATTCGTGCCTGTAATTTATATATTCTAATTCTTTTCTTAATTCCTCATAGGGTCTGTAAGTTCTATGCCCGTGGAAAATGTTTCAGAGGCGAGCAATGTGATTACTCTCATGACGTACAGGATACTCCAGTTGATATTTGCACATTCTATCAGAAGGGACACTGCTCTTATGGTAGTCGATGTAGATATAAACATGTCAAAGCTTCTCAGGCAAGTTCTGCATCATCTTCAGAAAATGGTCGGCAATCTCTGTCTTCAAAGTCTGTCATAGATCATACTAGCGGAGGAAAATCACGGTGGATCCCCAAGAATACAAATTCTGCTAGCTTTGGTCATCTTAAGCATGTGAATTCTCCGAGGAGTGGTGATGTTGGTGAATCTAGTAATGCTATGCCTTCAAAGCATATCTTTTGTACCTATGCTGCCGCCAACTGTCCCTTGGGAAAAAAATGCTTGCTCATTCATGGAGACCAGTGTCTGTATTGTAGAAAGTATTGCTTGCATCCTGCTGACCAAAGGGAGAGAGAGAATCATTTGAATTCTTGTGACAAAAAGGAAAAATACAATCAGGCATTAAAAGATAGTCAAGAAATAGAGTGCAATATTTGCTTGGACCGTGTTCTTTCAAAGCCTAAAGCTTCTGAATGTAAGTTTGGGATGCTTCCTGAATGCGACCATGCTTTCTGCTTATCCTGTATCAGGAATTGGCGGAACAGTGCCTCGAACTCTGAAGCGGATGTCTTTCAAATTGCTAATAACAATAATACAGTGAGGACTTGCCCTGTGTGTCGCAAGCTATCATATTTTGTGATTCCAAGTCCTATATGGTACTCCACAAAGGAAGAAAAGCAGGAAATTATTGATAACTACAAGGCAAATTGCAAGTTGATTGATTGCAAGCATTTTGACTTTGGAAATGGGAACTGTCCATTTGGAGCTAGGTGTTTCTATAAGCATACTGTGAAGCCAGGCTCAGTGACATGGAAACATGGCAAGCCACCACGTCGTCGCCGCTCCAGAGCACAAAATAATATGGATATGTATGAAATGATGGATATGCTCAGTGAATTTGATTTACAAAGTGGTGAATTCTATTCCATCATGCGGGAATCAGAGTTTTTTAAAGATATGGATCCTTATGAGATGATGGCTGTATCAGATATGCTGGCTTCCTCTGGTTCAGGACCGAGACTTTTTGATGATGAAGATTCTGATGATGAAATGGGTTTTTTGGATATGGCGGATCTATCAGCATCGCTGGATGACCCTTTTGGGGATGATGATGAATTAAATCCTTCGCAAGCAGCCTTCTTATCAATGATAATGCAATCTAACTTGGAAGAAGATAGTGAAGGGGACGAGGATGACTAG 1434 0.4017 MISCHCVFLYLSIGIADSSLIIRACNLYILILFLIPHRVCKFYARGKCFRGEQCDYSHDVQDTPVDICTFYQKGHCSYGSRCRYKHVKASQASSASSSENGRQSLSSKSVIDHTSGGKSRWIPKNTNSASFGHLKHVNSPRSGDVGESSNAMPSKHIFCTYAAANCPLGKKCLLIHGDQCLYCRKYCLHPADQRERENHLNSCDKKEKYNQALKDSQEIECNICLDRVLSKPKASECKFGMLPECDHAFCLSCIRNWRNSASNSEADVFQIANNNNTVRTCPVCRKLSYFVIPSPIWYSTKEEKQEIIDNYKANCKLIDCKHFDFGNGNCPFGARCFYKHTVKPGSVTWKHGKPPRRRRSRAQNNMDMYEMMDMLSEFDLQSGEFYSIMRESEFFKDMDPYEMMAVSDMLASSGSGPRLFDDEDSDDEMGFLDMADLSASLDDPFGDDDELNPSQAAFLSMIMQSNLEEDSEGDEDD 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3269g00019 477 Pfam Zinc finger, C3HC4 type (RING finger) 221 284 IPR018957 GO:0046872
Pral3269g00019 477 ProSiteProfiles Zinc finger RING-type profile. 221 285 IPR001841 -
Pral3269g00019 477 SMART ring_2 221 284 IPR001841 -
Pral3269g00019 477 ProSiteProfiles Zinc finger C3H1-type profile. 39 61 IPR000571 GO:0046872
Pral3269g00019 477 PANTHER MAKORIN-RELATED 40 388 IPR045072 GO:0000209|GO:0061630
Pral3269g00019 477 SMART c3hfinal6 314 342 IPR000571 GO:0046872
Pral3269g00019 477 SMART c3hfinal6 153 178 IPR000571 GO:0046872
Pral3269g00019 477 SMART c3hfinal6 35 60 IPR000571 GO:0046872
Pral3269g00019 477 SMART c3hfinal6 62 88 IPR000571 GO:0046872
Pral3269g00019 477 ProSiteProfiles Zinc finger C3H1-type profile. 314 343 IPR000571 GO:0046872
Pral3269g00019 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 317 IPR013083 -
Pral3269g00019 477 CDD RING-HC_MKRN 219 285 - -
Pral3269g00019 477 ProSiteProfiles Zinc finger C3H1-type profile. 62 89 IPR000571 GO:0046872
Pral3269g00019 477 SUPERFAMILY RING/U-box 211 291 - -
Pral3269g00019 477 SUPERFAMILY CCCH zinc finger 37 59 IPR036855 GO:0046872
Pral3269g00019 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 66 87 IPR000571 GO:0046872
Pral3269g00019 477 ProSitePatterns Zinc finger RING-type signature. 245 254 IPR017907 -
Pral3269g00019 477 MobiDBLite consensus disorder prediction 93 127 - -
Pral3269g00019 477 SUPERFAMILY CCCH zinc finger 64 86 IPR036855 GO:0046872
Pral3269g00019 477 Gene3D - 65 179 - -
Pral3269g00019 477 Gene3D - 35 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3269g00019 Pral-Chr3269 105876 109235 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral3269g00019 zf-C3HC4 7e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3269g00019 K15687 - gmx:100788886 561.222