Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3269g00018 ATGTCTCAGAGGGTCTGTAAGTTCTATGCCCGTGGAAAATGTTTCAGAGGCGAGCAATGTGATTACTCTCATGACGTACAGGATACTCCAGTTGATATTTGCACATTCTATCAGAAGGGACACTGCTCTTATGGTAGTCGATGTAGATATAAACATGTCAAAGCTTCTCAGGCAAGTTCTGCATCATCTTCAGAAAATGGTCGGCAATCTCTGTCTTCAAAGTCTGTCATAGATCATACTAGCGGAGGAAAATCACGGTGGATCCCCAAGAATACAAATTCTGCTAGCTTTGGTCATCTTAAGCATGTGAATTCTCCGAGGAGTGGTGATGTTGGTGAATCTAGTAATGCTATGCCTTCAAAGCATATCTTTTGTACCTATGCTGCCGCCAACTGTCCCTTGGGAAAAAAATGCTTGCTCATTCATGGAGACCAGTGTCTGTATTGTAGAAAGTATTGCTTGCATCCTGCTGACCAAAGGGAGAGAGAGAATCATTTGAATTCTTGTGACAAAAAGGAAAAATACAATCAGGCATTAAAAGATAGTCAAGAAATAGAGTGCAATATTTGCTTGGACCGTGTTCTTTCAAAGCCTAAAGCTTCTGAATGTAAGTTTGGGATGCTTCCTGAATGCGACCATGCTTTCTGCTTATCCTGTATCAGGAATTGGCGGAACAGTGCCTCGAACTCTGAAGCGGATGTCTTTCAAATTGCTAATAACAATAATACAGTGAGGACTTGCCCTGTGTGTCGCAAGCTATCATATTTTGTGATTCCAAGTCCTATATGGTACTCCACAAAGGAAGAAAAGCAGGAAATTATTGATAACTACAAGGCAAATTGCAAGTTGATTGATTGCAAGCATTTTGACTTTGGAAATGGGAACTGTCCATTTGGAGCTAGGTGTTTCTATAAGCATACTGTGAAGCCAGGCTCAGTGACATGGAAACATGGCAAGCCACCACGTCGTCGCCGCTCCAGAGCACAAAATAATATGGATATGTATGAAATGATGGATATGCTCAGTGAATTTGATTTACAAAGTGGTGAATTCTATTCCATCATGCGGGAATCAGAGTTTTTTAAAGATATGGATCCTTATGAGATGATGGCTGTATCAGATATGCTGGCTTCCTCTGGTTCAGGACCGAGACTTTTTGATGATGAAGATTCTGATGATGAAATGGGTTTTTTGGATATGGCGGATCTATCAGCATCGCTGGATGACCCTTTTGGGGATGATGATGAATTAAATCCTTCGCAAGCAGCCTTCTTATCAATGATAATGCAATCTAACTTGGAAGAAGATAGTGAAGGGGACGAGGATGACTAG 1332 0.4122 MSQRVCKFYARGKCFRGEQCDYSHDVQDTPVDICTFYQKGHCSYGSRCRYKHVKASQASSASSSENGRQSLSSKSVIDHTSGGKSRWIPKNTNSASFGHLKHVNSPRSGDVGESSNAMPSKHIFCTYAAANCPLGKKCLLIHGDQCLYCRKYCLHPADQRERENHLNSCDKKEKYNQALKDSQEIECNICLDRVLSKPKASECKFGMLPECDHAFCLSCIRNWRNSASNSEADVFQIANNNNTVRTCPVCRKLSYFVIPSPIWYSTKEEKQEIIDNYKANCKLIDCKHFDFGNGNCPFGARCFYKHTVKPGSVTWKHGKPPRRRRSRAQNNMDMYEMMDMLSEFDLQSGEFYSIMRESEFFKDMDPYEMMAVSDMLASSGSGPRLFDDEDSDDEMGFLDMADLSASLDDPFGDDDELNPSQAAFLSMIMQSNLEEDSEGDEDD 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3269g00018 443 ProSiteProfiles Zinc finger C3H1-type profile. 280 309 IPR000571 GO:0046872
Pral3269g00018 443 Pfam Zinc finger, C3HC4 type (RING finger) 187 250 IPR018957 GO:0046872
Pral3269g00018 443 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Pral3269g00018 443 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 53 IPR000571 GO:0046872
Pral3269g00018 443 SUPERFAMILY CCCH zinc finger 30 52 IPR036855 GO:0046872
Pral3269g00018 443 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Pral3269g00018 443 MobiDBLite consensus disorder prediction 59 93 - -
Pral3269g00018 443 SMART ring_2 187 250 IPR001841 -
Pral3269g00018 443 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Pral3269g00018 443 SMART c3hfinal6 280 308 IPR000571 GO:0046872
Pral3269g00018 443 SMART c3hfinal6 119 144 IPR000571 GO:0046872
Pral3269g00018 443 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Pral3269g00018 443 PANTHER MAKORIN-RELATED 1 354 IPR045072 GO:0000209|GO:0061630
Pral3269g00018 443 Gene3D - 1 67 - -
Pral3269g00018 443 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Pral3269g00018 443 SUPERFAMILY RING/U-box 177 257 - -
Pral3269g00018 443 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Pral3269g00018 443 CDD RING-HC_MKRN 185 251 - -
Pral3269g00018 443 ProSiteProfiles Zinc finger RING-type profile. 187 251 IPR001841 -
Pral3269g00018 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 283 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3269g00018 Pral-Chr3269 105876 109432 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral3269g00018 zf-C3HC4 5.8e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3269g00018 K15687 - gmx:100788886 564.303