Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3269g00017 ATGTCGTTCTATTTCAGCTTGCATATTATTCTAACTTCTATACTGTCCTTTTCTGAATCCTCTAGGGTTCTTTGCAAATTCTTTGCCCATGGAGCATGTTTGAAGGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAACAACATATGTACGTTTTATCAGAAAGGAGCCTGTGCCTATGGCAGTCGCTGCAGATATGACCATGTCAAAGCTTCCCGTGAACAGTCCTATCATCCATCTTCTTCTGCCAGTGTACACCCCCTAAATTCAGATTCTTCTATAGTTGGTAGTACTAGAGTTGCATCAAATGGGGCTGCTACAATTCCTGAATTGACTACTCGTAGTGGACTTTCCTTTCCTATTATTCCTGCATGGAATGGAGAATCTGAGCCTCATATTCCTGATTATTTTCAAGCTTGGAATCCAGAACCTGGGCATCAGGATTTTTTAGAGGATAGTGATGCCAGTGAATCCAGAATTAATGATCCTTCTGAGCGTCCTATCTGTTCTTTTGCTGCTGCTGGTAATTGTCCTAGGAAGGAGAAATGCCCTTTTATTCACGGAGATTTGTGTCCTACCTGTGGAAAGCACTGCTTACATCCTTTTCGACCTGAAGAAAGAGAGGAACATACGAATGCTTGCCAAAAAAAGCAAAAGCATCTTGAGGCTTTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTTTCCAAGCCCACTGCAGCTGAACGCAAGTTTGGGCTGCTCTCTGAGTGTGATCATCCCTTCTGCATATCTTGTATTAGGAATTGGCGTAATAGTAACCCAACTCTGGGAATGGACGTGAATACCACATTGAGGGCCTGTCCAATTTGTCGTAAGCTCTCTTACTTTGTGATTCCAAGTGTCATTTGGTACTCTACAACGGAAGAAAAACAGGAAATCATCGACAGCTACAAGGAAAAGCTCAAATCAATTGATTGCAAGCATTTTGACTTTGGGAATGGAAACTGCCCTTTTGGTACTAGCTGTTTTTACAAGCATGCTTACCGAGATGGCAGACTTGAGCAAGTAGTTCTGAGGCATCTTGGGGCTGCAGATGGCAACACTGTGATTGCTAAAGACGTCAGGCTATCAGATTTCCTTTCTAACATGCATTTAAGATGA 1167 0.425 MSFYFSLHIILTSILSFSESSRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGACAYGSRCRYDHVKASREQSYHPSSSASVHPLNSDSSIVGSTRVASNGAATIPELTTRSGLSFPIIPAWNGESEPHIPDYFQAWNPEPGHQDFLEDSDASESRINDPSERPICSFAAAGNCPRKEKCPFIHGDLCPTCGKHCLHPFRPEEREEHTNACQKKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRNSNPTLGMDVNTTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDSYKEKLKSIDCKHFDFGNGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGNTVIAKDVRLSDFLSNMHLR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3269g00017 388 SMART ring_2 235 292 IPR001841 -
Pral3269g00017 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 298 IPR013083 -
Pral3269g00017 388 PANTHER MAKORIN-RELATED 23 385 IPR045072 GO:0000209|GO:0061630
Pral3269g00017 388 Coils Coil 210 230 - -
Pral3269g00017 388 Pfam CCCH-type zinc finger 24 44 IPR041367 -
Pral3269g00017 388 Pfam CCCH-type zinc finger 52 71 IPR041367 -
Pral3269g00017 388 Pfam Zinc finger, C3HC4 type (RING finger) 235 292 IPR018957 GO:0046872
Pral3269g00017 388 ProSiteProfiles Zinc finger C3H1-type profile. 19 46 IPR000571 GO:0046872
Pral3269g00017 388 ProSiteProfiles Zinc finger RING-type profile. 235 293 IPR001841 -
Pral3269g00017 388 Pfam RNA-binding, Nab2-type zinc finger 327 349 - -
Pral3269g00017 388 Pfam RNA-binding, Nab2-type zinc finger 171 191 - -
Pral3269g00017 388 ProSiteProfiles Zinc finger C3H1-type profile. 166 193 IPR000571 GO:0046872
Pral3269g00017 388 ProSiteProfiles Zinc finger C3H1-type profile. 322 351 IPR000571 GO:0046872
Pral3269g00017 388 SUPERFAMILY CCCH zinc finger 21 44 IPR036855 GO:0046872
Pral3269g00017 388 Gene3D - 15 50 - -
Pral3269g00017 388 ProSitePatterns Zinc finger RING-type signature. 259 268 IPR017907 -
Pral3269g00017 388 CDD RING-HC_MKRN 233 293 - -
Pral3269g00017 388 Gene3D - 51 98 - -
Pral3269g00017 388 ProSiteProfiles Zinc finger C3H1-type profile. 47 74 IPR000571 GO:0046872
Pral3269g00017 388 SUPERFAMILY CCCH zinc finger 50 71 IPR036855 GO:0046872
Pral3269g00017 388 SUPERFAMILY RING/U-box 224 299 - -
Pral3269g00017 388 SMART c3hfinal6 20 45 IPR000571 GO:0046872
Pral3269g00017 388 SMART c3hfinal6 167 192 IPR000571 GO:0046872
Pral3269g00017 388 SMART c3hfinal6 322 350 IPR000571 GO:0046872
Pral3269g00017 388 SMART c3hfinal6 48 73 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3269g00017 Pral-Chr3269 99536 103678 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral3269g00017 zf-C3HC4 3.2e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3269g00017 K15687 - gmx:100787817 602.438