Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3269g00009 ATGAGTGCTGTCTATAGCCCTGCTCTCAGATACTCGGGAAACTACTTAGAAGTGGATTCTAGAAGCATCCATATACAGCAGCAGCAGCAGCAACGTTGTTATCATCATAATCAGCAGCAGCAGCAAATTTCTGGGCTATTAAGGTACCGTTCTGCTCCAAGCTCACTGCTGGCAAACCTGGTGGAAAGAGGAGGAGGTTGCAGAGGTTTGGATCAACGGCAACAACATGAGAGAAGAGGTGATGTTCCATCCTTTAATGCAGAAATGGAAGGAATGTTAGATTCTGGTTCCGACAGTGGATGGAGCAATGCGAAGCATGAAGGAGGAGGAGGAGGAGGAGGAGGTTCTGTTTTCTGTAATGAGGCTGATCAGCTGATTCACAATTCTCATGAGAGATTCCAAGAATTTGCAGTGAGTGGGTCATGTTCAAGTGTGATGATGAATAATGTTATGGGTTTTCAGAACTCCGCTCAATCCAAAATGGCTTCTGTGAATTGTTCCAACAATCTTCTCATCAGGCAGAAGACCTCACCTCCTGGGTTTTTCTCCAGTTTCTCATTCACAAATGCACTGGGAGAACAAGCTGCGACATCCACTAGTGGGTTGAATGGTGCCCTTACCTTCTCATCTGAGCCATCTTCCTCTTGCCCAAGAAGGATGCCACAGATTGCAGAAAATGGAAATGAAACCCTAGAACTCCAAGAAGAACAAGAAGAAGATGAAGCAAGAACCTGTGTTGAAACTAGAAACCTGAGAAATGATAATGGAAGCCAGCAAAAAAGTTATGTGCCCAGTTTTACAAGTGACTTGTGGGAAGGTTCTTCATTCACAGCTCATAAAACAGCCAGTGACAGTAATGAATTCTTGTTTTCTACTTCAGATGCCTTGGAAACTCAGAAAAGAGATCAATTTGGATATCAGAATGTTGGCTTAACTCATCAAATGAGTCTGCCTAGTTCATCAACTAAGACAGGTGGCATAGAGAGGATTTTGCATATTCAAGGATCTGTTCCTTGTAAAATTAGGGCCAAAAGAGGGTTTGCTACTCATCCAAGAAGCATTGCAGAGAGGTTAAGAAGAACAAGGATTAGTGAAAGAATAAAGAAGCTGCAAGAGCTTTTCCCAAAAATCGACAAGCAAACAAACACAGCAGATATGTTGGATTTGGCGGTTGATTATATTAAAGACCTGCAAAAACAAGTCAAGATACTAACAGATACAAGGGCAAAATGCAGATGCTCAAGTGTTCAAAAGCAATATTGA 1263 0.4228 MSAVYSPALRYSGNYLEVDSRSIHIQQQQQQRCYHHNQQQQQISGLLRYRSAPSSLLANLVERGGGCRGLDQRQQHERRGDVPSFNAEMEGMLDSGSDSGWSNAKHEGGGGGGGGSVFCNEADQLIHNSHERFQEFAVSGSCSSVMMNNVMGFQNSAQSKMASVNCSNNLLIRQKTSPPGFFSSFSFTNALGEQAATSTSGLNGALTFSSEPSSSCPRRMPQIAENGNETLELQEEQEEDEARTCVETRNLRNDNGSQQKSYVPSFTSDLWEGSSFTAHKTASDSNEFLFSTSDALETQKRDQFGYQNVGLTHQMSLPSSSTKTGGIERILHIQGSVPCKIRAKRGFATHPRSIAERLRRTRISERIKKLQELFPKIDKQTNTADMLDLAVDYIKDLQKQVKILTDTRAKCRCSSVQKQY 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3269g00009 420 CDD bHLH_AtbHLH_like 352 404 IPR045239 -
Pral3269g00009 420 Gene3D - 349 419 IPR036638 GO:0046983
Pral3269g00009 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 397 IPR011598 GO:0046983
Pral3269g00009 420 MobiDBLite consensus disorder prediction 69 84 - -
Pral3269g00009 420 Pfam Helix-loop-helix DNA-binding domain 353 398 IPR011598 GO:0046983
Pral3269g00009 420 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 52 413 - -
Pral3269g00009 420 SMART finulus 353 403 IPR011598 GO:0046983
Pral3269g00009 420 FunFam Transcription factor bHLH130 family 348 417 - -
Pral3269g00009 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 413 IPR036638 GO:0046983
Pral3269g00009 420 MobiDBLite consensus disorder prediction 68 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3269g00009 Pral-Chr3269 60786 63524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3269g00009 27 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 33.415 2.84e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3269g00009 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3269g00009 - - pcin:129314949 566.614